4PYW

1.92 angstrom crystal structure of A1AT:TTAI ternary complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.528926% PEG3350, 0.1 M Bis-Tris pH6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
2.1943.71

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 113.71α = 90
b = 38.96β = 100.13
c = 93.13γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-21.03320ESRFID23-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9155.8730573
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.912.0299.20.4082.54

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.9155.8728725151895.730.192190.19040.22497RANDOM59.249
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.356.31-6.042.29
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free39.127
r_dihedral_angle_2_deg39.065
r_dihedral_angle_3_deg16.129
r_dihedral_angle_4_deg13.855
r_sphericity_bonded12.563
r_dihedral_angle_1_deg6.98
r_long_range_B_refined5.868
r_long_range_B_other5.83
r_mcangle_it5.132
r_mcangle_other5.131
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free39.127
r_dihedral_angle_2_deg39.065
r_dihedral_angle_3_deg16.129
r_dihedral_angle_4_deg13.855
r_sphericity_bonded12.563
r_dihedral_angle_1_deg6.98
r_long_range_B_refined5.868
r_long_range_B_other5.83
r_mcangle_it5.132
r_mcangle_other5.131
r_scangle_other5.039
r_scbond_it4.394
r_scbond_other4.392
r_mcbond_other4.146
r_mcbond_it4.145
r_rigid_bond_restr2.762
r_angle_refined_deg1.55
r_angle_other_deg0.787
r_chiral_restr0.081
r_bond_refined_d0.011
r_gen_planes_refined0.006
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2937
Nucleic Acid Atoms
Solvent Atoms96
Heterogen Atoms12

Software

Software
Software NamePurpose
ADSCdata collection
PHASERphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling