X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52930.1 M Mes/ NaOH pH 6.5, 14.4% (w/ v) PEG 8,000, 20% (v/ v) glycerol, 0.16 M calcium acetate
Crystal Properties
Matthews coefficientSolvent content
2.5952.54

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.49α = 90
b = 103.06β = 90
c = 152.97γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2012-09-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA1.07169SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.148.851000.0832013.15478546
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.299.90.7444.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5EX82.148.8352043274299.960.199690.198170.22859RANDOM54.104
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.81.99-0.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.561
r_dihedral_angle_4_deg16.884
r_dihedral_angle_3_deg13.871
r_dihedral_angle_1_deg5.643
r_long_range_B_refined5.066
r_long_range_B_other5.066
r_scangle_other1.97
r_mcangle_it1.671
r_mcangle_other1.671
r_angle_refined_deg1.349
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.561
r_dihedral_angle_4_deg16.884
r_dihedral_angle_3_deg13.871
r_dihedral_angle_1_deg5.643
r_long_range_B_refined5.066
r_long_range_B_other5.066
r_scangle_other1.97
r_mcangle_it1.671
r_mcangle_other1.671
r_angle_refined_deg1.349
r_scbond_it1.215
r_scbond_other1.215
r_mcbond_it1.01
r_mcbond_other1.007
r_angle_other_deg0.956
r_chiral_restr0.082
r_bond_refined_d0.009
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6084
Nucleic Acid Atoms
Solvent Atoms193
Heterogen Atoms152

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing