5NI1

CryoEM structure of haemoglobin at 3.2 A determined with the Volta phase plate


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.077
r_long_range_B_other18.721
r_long_range_B_refined18.717
r_scangle_other12.743
r_dihedral_angle_3_deg12.446
r_dihedral_angle_4_deg11.357
r_mcangle_other9.833
r_mcangle_it9.818
r_scbond_it7.102
r_scbond_other7.091
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.077
r_long_range_B_other18.721
r_long_range_B_refined18.717
r_scangle_other12.743
r_dihedral_angle_3_deg12.446
r_dihedral_angle_4_deg11.357
r_mcangle_other9.833
r_mcangle_it9.818
r_scbond_it7.102
r_scbond_other7.091
r_dihedral_angle_1_deg5.712
r_mcbond_it5.564
r_mcbond_other5.52
r_angle_refined_deg1.532
r_angle_other_deg1.296
r_chiral_restr0.104
r_bond_refined_d0.01
r_gen_planes_refined0.006
r_gen_planes_other0.003
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Hemoglobin
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE-PROPANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles175300
Reported Resolution (Å)3.2
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Data Acquisition
Detector TypeGATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å**2)40
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION