X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP291.150.1 M Bis-Tris (pH 5.5) and 20-25% (w/v) PEG3350
Crystal Properties
Matthews coefficientSolvent content
3.3463.22

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 96.147α = 90
b = 96.147β = 90
c = 80.688γ = 120
Symmetry
Space GroupP 63 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2016-10-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.9184BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.1648.0799.920.075120.112.81974906
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.161.20.617

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1J301.1648.0774017210199.910.124590.123990.14603RANDOM16.954
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.130.060.13-0.42
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.55
r_dihedral_angle_4_deg14.807
r_dihedral_angle_3_deg12.163
r_long_range_B_refined4.568
r_dihedral_angle_1_deg4.178
r_long_range_B_other3.804
r_scangle_other3.147
r_rigid_bond_restr3.039
r_scbond_it2.71
r_scbond_other2.71
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.55
r_dihedral_angle_4_deg14.807
r_dihedral_angle_3_deg12.163
r_long_range_B_refined4.568
r_dihedral_angle_1_deg4.178
r_long_range_B_other3.804
r_scangle_other3.147
r_rigid_bond_restr3.039
r_scbond_it2.71
r_scbond_other2.71
r_angle_refined_deg1.827
r_mcangle_other1.816
r_mcangle_it1.795
r_angle_other_deg1.741
r_mcbond_it1.312
r_mcbond_other1.281
r_chiral_restr0.109
r_bond_refined_d0.014
r_gen_planes_refined0.01
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1109
Nucleic Acid Atoms
Solvent Atoms238
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing