X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.3291100 mM Tris-HCl (pH 8.3), 30% PEG 4000, 0.2 M sodium acetate
Crystal Properties
Matthews coefficientSolvent content
2.244.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.615α = 90
b = 119.75β = 90
c = 128.568γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2020-12-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONLNLS SIRUS BEAMLINE MANACA1.3236LNLS SIRUSMANACA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8543.8199.950.9979.33258500
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.91699.980.8872

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE7C221.8543.8158491291599.9760.1650.16280.20719.406
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.3870.6270.76
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.638
r_dihedral_angle_4_deg20.933
r_dihedral_angle_3_deg13.935
r_dihedral_angle_1_deg7.13
r_lrange_it6.326
r_lrange_other6.325
r_scangle_it3.89
r_scangle_other3.889
r_mcangle_it2.599
r_mcangle_other2.598
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.638
r_dihedral_angle_4_deg20.933
r_dihedral_angle_3_deg13.935
r_dihedral_angle_1_deg7.13
r_lrange_it6.326
r_lrange_other6.325
r_scangle_it3.89
r_scangle_other3.889
r_mcangle_it2.599
r_mcangle_other2.598
r_scbond_it2.476
r_scbond_other2.476
r_mcbond_it1.647
r_mcbond_other1.647
r_angle_refined_deg1.598
r_angle_other_deg1.471
r_nbd_refined0.214
r_nbd_other0.212
r_symmetry_nbd_other0.197
r_xyhbond_nbd_refined0.196
r_symmetry_xyhbond_nbd_other0.184
r_nbtor_refined0.176
r_symmetry_nbd_refined0.153
r_symmetry_xyhbond_nbd_refined0.139
r_symmetry_nbtor_other0.087
r_chiral_restr0.083
r_bond_refined_d0.01
r_gen_planes_refined0.009
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5256
Nucleic Acid Atoms
Solvent Atoms959
Heterogen Atoms22

Software

Software
Software NamePurpose
MxCuBEdata collection
XDSdata reduction
SCALAdata scaling
MOLREPphasing
REFMACrefinement