7UXX

Crystal structure of SARS-CoV-2 nucleocapsid protein C-terminal domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.163 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Discovery and structural characterization of chicoric acid as a SARS-CoV-2 nucleocapsid protein ligand and RNA binding disruptor

Bezerra, E.H.S.Mercaldi, G.F.Batista, F.A.H.Tonoli, C.C.C.Shimizu, J.F.Soprano, A.S.da Silva, J.C.Ribeiro Filho, H.V.Faria, J.N.da Cunha, M.G.Nagai, A.Bajgelman, M.C.Rocco, S.A.Bruder, M.C.P.Oliveira, P.S.L.Cordeiro, A.T.Marques, R.E.Franchini, K.G.Sforca, M.L.Benedetti, C.E.Figueira, A.C.M.Trivella, D.B.B.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Nucleoprotein114Severe acute respiratory syndrome coronavirus 2Mutation(s): 0 
Gene Names: N
UniProt
Find proteins for P0DTC9 (Severe acute respiratory syndrome coronavirus 2)
Explore P0DTC9 
Go to UniProtKB:  P0DTC9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0DTC9
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.163 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 43.615α = 90
b = 119.75β = 90
c = 128.568γ = 90
Software Package:
Software NamePurpose
MxCuBEdata collection
XDSdata reduction
SCALAdata scaling
MOLREPphasing
REFMACrefinement

Structure Validation

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Ligand Structure Quality Assessment 



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentBrazil01.20.0003.00
Other governmentBrazil--
Other governmentBrazil--

Revision History  (Full details and data files)

  • Version 1.0: 2022-06-22
    Type: Initial release