UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 1Y6G designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 1Y6G_UDP_B_2021 | 47% | 67% | 0.216 | 0.957 | 0.65 | 0.62 | - | 1 | 1 | 0 | 100% | 1 |
| 1Y6G_UDP_A_1404 | 40% | 69% | 0.236 | 0.948 | 0.61 | 0.58 | - | 1 | 1 | 0 | 100% | 1 |
| 1XV5_UDP_A_1402 | 99% | 58% | 0.044 | 0.979 | 1.03 | 0.6 | 1 | 1 | 1 | 0 | 100% | 1 |
| 1Y8Z_UDP_B_2001 | 94% | 70% | 0.074 | 0.973 | 0.58 | 0.58 | - | 1 | 1 | 0 | 100% | 1 |
| 1YA6_UDP_A_2001 | 94% | 70% | 0.083 | 0.982 | 0.57 | 0.58 | - | 1 | 0 | 0 | 100% | 1 |
| 1Y6F_UDP_B_601 | 90% | 68% | 0.098 | 0.982 | 0.58 | 0.67 | - | 1 | 1 | 0 | 100% | 1 |
| 8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
| 8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 42% | 0.032 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
| 3H4T_UDP_A_604 | 100% | 42% | 0.039 | 0.99 | 1.01 | 1.22 | 2 | 3 | 0 | 0 | 100% | 1 |
