SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
SQD is a Ligand Of Interest in 4TNK designated by the RCSB
Best-fitted instance in this entry | |
Other instances in this entry |
Best-fitted instance in this entry | |
Best-fitted PDB instances with same target (top 5) |
Best-fitted instance in this entry | |
Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
---|---|---|---|---|---|---|---|---|---|---|---|---|
4TNK_SQD_a_412 | 27% | 31% | 0.233 | 0.89 | 0.96 | 1.76 | 3 | 11 | 0 | 0 | 94% | 1 |
4TNK_SQD_A_413 | 17% | 31% | 0.258 | 0.844 | 0.96 | 1.78 | 3 | 10 | 0 | 0 | 94% | 1 |
4TNK_SQD_A_414 | 3% | 36% | 0.453 | 0.804 | 0.95 | 1.57 | 3 | 9 | 0 | 0 | 100% | 1 |
4TNK_SQD_b_602 | 2% | 28% | 0.443 | 0.729 | 1.02 | 1.83 | 4 | 10 | 0 | 0 | 87% | 1 |
4TNK_SQD_a_401 | 1% | 35% | 0.6 | 0.8 | 0.95 | 1.58 | 3 | 10 | 0 | 0 | 100% | 1 |
4TNK_SQD_F_103 | 1% | 31% | 0.631 | 0.81 | 1.04 | 1.7 | 3 | 11 | 0 | 0 | 83% | 1 |
4TNK_SQD_B_622 | 1% | 28% | 0.602 | 0.743 | 1.05 | 1.81 | 3 | 11 | 0 | 0 | 80% | 1 |
4TNK_SQD_f_103 | 0% | 31% | 0.716 | 0.811 | 1.02 | 1.7 | 3 | 11 | 0 | 0 | 83% | 1 |
4TNK_SQD_B_627 | 0% | 29% | 0.683 | 0.67 | 1.01 | 1.81 | 3 | 10 | 0 | 0 | 87% | 1 |
4TNK_SQD_d_403 | 0% | 29% | 0.796 | 0.717 | 1.04 | 1.77 | 3 | 11 | 0 | 0 | 80% | 1 |
5V2C_SQD_a_413 | 94% | 21% | 0.075 | 0.976 | 1.12 | 2.14 | 4 | 12 | 0 | 0 | 100% | 1 |
5GTI_SQD_A_409 | 91% | 29% | 0.066 | 0.95 | 0.98 | 1.84 | 3 | 13 | 0 | 0 | 100% | 1 |
5WS6_SQD_A_411 | 87% | 32% | 0.084 | 0.954 | 0.88 | 1.78 | 2 | 12 | 0 | 0 | 100% | 1 |
5B66_SQD_a_409 | 79% | 23% | 0.091 | 0.936 | 1.01 | 2.11 | 4 | 11 | 0 | 0 | 100% | 1 |
3WU2_SQD_A_412 | 78% | 25% | 0.089 | 0.932 | 0.86 | 2.15 | 2 | 17 | 5 | 0 | 100% | 1 |
6W1V_SQD_A_409 | 78% | 25% | 0.089 | 0.937 | 1.02 | 2.02 | 4 | 16 | 0 | 0 | 96% | 1 |