Ligand validation:5CB4

GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 5CB4 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5CB4_GDP_D_501	60%	45%	0.157	0.942	0.96	1.19	1	4	1	0	100%	1
5CB4_GDP_B_501	52%	45%	0.195	0.954	0.98	1.16	1	4	0	0	100%	1
5YL2_GDP_B_501	96%	49%	0.081	0.989	0.9	1.08	1	2	0	0	100%	1
6S8K_GDP_B_502	95%	2%	0.064	0.967	4.55	2.34	14	10	1	0	100%	1
5NQU_GDP_B_501	95%	23%	0.075	0.978	1.23	2.09	2	5	0	0	100%	1
5JCB_GDP_D_501	93%	43%	0.089	0.983	1.1	1.16	2	3	1	0	100%	1
7YZ3_GDP_B_501	92%	46%	0.075	0.966	0.96	1.16	1	3	1	0	100%	1
1RRG_GDP_A_183	100%	19%	0.036	0.997	2.05	1.56	7	3	0	0	100%	1
5YMX_GDP_A_301	100%	54%	0.038	0.994	0.92	0.85	1	-	2	0	100%	1
8CNJ_GDP_B_201	100%	56%	0.04	0.992	0.91	0.77	1	-	0	0	100%	1
5UQW_GDP_A_1002	100%	47%	0.04	0.99	1.04	1.01	2	2	0	0	100%	1
2PHN_GDP_A_2696	100%	45%	0.046	0.99	1.08	1.08	1	2	0	0	100%	1

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.