UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5DJS designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5DJS_UDP_D_601 | 30% | 31% | 0.25 | 0.914 | 1.12 | 1.59 | 2 | 5 | 1 | 0 | 100% | 0.7 |
5DJS_UDP_C_601 | 23% | 33% | 0.264 | 0.889 | 1.13 | 1.5 | 3 | 7 | 0 | 0 | 100% | 0.7 |
5DJS_UDP_B_601 | 22% | 32% | 0.268 | 0.883 | 1.14 | 1.54 | 2 | 6 | 1 | 0 | 100% | 0.7 |
5DJS_UDP_A_601 | 20% | 30% | 0.275 | 0.877 | 1.15 | 1.64 | 2 | 6 | 0 | 0 | 100% | 0.7 |
8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
2B69_UDP_A_900 | 100% | 42% | 0.032 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
3H4T_UDP_A_604 | 100% | 42% | 0.039 | 0.99 | 1.01 | 1.22 | 2 | 3 | 0 | 0 | 100% | 1 |