UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5F87 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5F87_UDP_F_501 | 61% | 30% | 0.197 | 0.987 | 1.12 | 1.67 | 3 | 5 | 0 | 0 | 100% | 1 |
| 5F87_UDP_B_501 | 61% | 34% | 0.199 | 0.989 | 1.05 | 1.55 | 2 | 7 | 1 | 0 | 100% | 1 |
| 5F87_UDP_D_501 | 56% | 29% | 0.206 | 0.98 | 1.15 | 1.68 | 3 | 5 | 1 | 0 | 100% | 1 |
| 5F87_UDP_C_501 | 56% | 30% | 0.202 | 0.975 | 1.16 | 1.61 | 3 | 7 | 0 | 0 | 100% | 1 |
| 5F87_UDP_E_501 | 54% | 31% | 0.213 | 0.98 | 1.19 | 1.56 | 4 | 6 | 1 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 53% | 31% | 0.225 | 0.988 | 1.13 | 1.59 | 2 | 5 | 2 | 0 | 100% | 1 |
| 5F84_UDP_A_501 | 99% | 30% | 0.052 | 0.984 | 1.39 | 1.42 | 4 | 5 | 0 | 0 | 100% | 1 |
| 5F85_UDP_A_501 | 90% | 35% | 0.104 | 0.988 | 1.1 | 1.46 | 3 | 5 | 0 | 0 | 100% | 1 |
| 8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
| 8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 42% | 0.032 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
| 3H4T_UDP_A_604 | 100% | 42% | 0.039 | 0.99 | 1.01 | 1.22 | 2 | 3 | 0 | 0 | 100% | 1 |
