Ligand validation:5HKV

SPD: SPERMIDINE

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5HKV_SPD_X_3484	42%	92%	0.201	0.921	0.16	0.38	-	-	5	0	100%	1
5HKV_SPD_X_3485	31%	94%	0.24	0.91	0.19	0.25	-	-	1	0	100%	1
5HKV_SPD_X_3483	21%	86%	0.259	0.872	0.25	0.47	-	-	1	0	100%	1
5HKV_SPD_X_3487	12%	96%	0.31	0.838	0.11	0.24	-	-	0	0	100%	1
5HKV_SPD_X_3489	4%	96%	0.439	0.808	0.14	0.23	-	-	10	0	100%	1
5HKV_SPD_X_3486	2%	89%	0.612	0.9	0.29	0.35	-	-	1	0	100%	1
5HKV_SPD_Y_213	1%	93%	0.464	0.699	0.25	0.24	-	-	0	0	100%	1
5HKV_SPD_X_3488	1%	89%	0.595	0.834	0.26	0.39	-	-	1	0	100%	1
5HKV_SPD_X_3482	1%	95%	0.589	0.826	0.19	0.2	-	-	0	0	100%	1
3C6K_SPD_C_501	86%	54%	0.094	0.964	0.42	1.34	-	1	0	0	100%	1
4C0Z_SPD_I_1221	72%	62%	0.142	0.968	0.67	0.75	-	-	2	0	100%	1
7XIH_SPD_A_302	72%	39%	0.111	0.936	1.18	1.26	1	1	4	0	100%	1
3WR7_SPD_B_201	67%	69%	0.154	0.965	0.28	0.88	-	-	0	0	100%	1
2O07_SPD_B_601	66%	66%	0.14	0.945	0.41	0.86	-	-	1	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.