GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5IN5 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5IN5_GDP_A_1002 | 99% | 44% | 0.053 | 0.986 | 0.89 | 1.27 | 1 | 5 | 0 | 0 | 100% | 1 |
| 5IN5_GDP_B_403 | 98% | 47% | 0.056 | 0.982 | 0.76 | 1.26 | - | 3 | 0 | 0 | 100% | 1 |
| 5IN5_GDP_D_403 | 98% | 45% | 0.059 | 0.979 | 0.9 | 1.22 | 1 | 5 | 0 | 0 | 100% | 1 |
| 5IN5_GDP_C_1002 | 96% | 48% | 0.076 | 0.985 | 0.91 | 1.09 | - | 3 | 0 | 0 | 100% | 1 |
| 5IN4_GDP_D_403 | 93% | 50% | 0.068 | 0.963 | 0.83 | 1.11 | - | 2 | 0 | 0 | 100% | 1 |
| 1T2A_GDP_D_1302 | 88% | 48% | 0.093 | 0.97 | 0.95 | 1.05 | 2 | 3 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 23% | 0.012 | 0.999 | 2.28 | 0.95 | 3 | 2 | 8 | 0 | 100% | 1 |
| 9BL0_GDP_A_201 | 100% | 46% | 0.016 | 0.998 | 0.96 | 1.11 | 1 | 2 | 1 | 0 | 100% | 1 |
| 8QEG_GDP_A_401 | 100% | 51% | 0.031 | 0.993 | 1.02 | 0.87 | 3 | 1 | 0 | 0 | 100% | 1 |
| 8QEH_GDP_A_405 | 100% | 55% | 0.03 | 0.993 | 0.89 | 0.85 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9BAJ_GDP_A_203 | 100% | 41% | 0.032 | 0.994 | 1.22 | 1.1 | 2 | 2 | 1 | 0 | 100% | 1 |
