GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5JCP designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5JCP_GDP_B_1201 | 92% | 44% | 0.096 | 0.986 | 0.85 | 1.32 | - | 4 | 0 | 0 | 100% | 1 |
| 5JCP_GDP_A_1201 | 91% | 43% | 0.099 | 0.987 | 0.93 | 1.27 | 1 | 5 | 0 | 0 | 100% | 1 |
| 5IRC_GDP_F_201 | 99% | 38% | 0.046 | 0.978 | 1.19 | 1.23 | 3 | 5 | 0 | 0 | 100% | 1 |
| 8FPX_GDP_A_201 | 97% | 47% | 0.063 | 0.98 | 1.02 | 1.03 | 2 | 2 | 0 | 0 | 100% | 1 |
| 8FPW_GDP_A_201 | 97% | 48% | 0.068 | 0.982 | 0.92 | 1.07 | - | 2 | 0 | 0 | 100% | 1 |
| 3MSX_GDP_A_181 | 92% | 24% | 0.086 | 0.978 | 1.09 | 2.01 | 2 | 6 | 0 | 0 | 100% | 1 |
| 5HPY_GDP_B_203 | 64% | 40% | 0.176 | 0.977 | 1.15 | 1.17 | 1 | 3 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 23% | 0.012 | 0.999 | 2.28 | 0.95 | 3 | 2 | 8 | 0 | 100% | 1 |
| 9BL0_GDP_A_201 | 100% | 46% | 0.016 | 0.998 | 0.96 | 1.11 | 1 | 2 | 1 | 0 | 100% | 1 |
| 8QEG_GDP_A_401 | 100% | 51% | 0.031 | 0.993 | 1.02 | 0.87 | 3 | 1 | 0 | 0 | 100% | 1 |
| 8QEH_GDP_A_405 | 100% | 55% | 0.03 | 0.993 | 0.89 | 0.85 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9BAJ_GDP_A_203 | 100% | 41% | 0.032 | 0.994 | 1.22 | 1.1 | 2 | 2 | 1 | 0 | 100% | 1 |
