UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5MQJ designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5MQJ_UDP_C_301 | 65% | 70% | 0.133 | 0.935 | 0.47 | 0.69 | - | 1 | 3 | 0 | 100% | 1 |
| 5MQJ_UDP_A_301 | 49% | 69% | 0.196 | 0.943 | 0.57 | 0.62 | 1 | - | 0 | 0 | 100% | 1 |
| 5MQJ_UDP_D_301 | 47% | 69% | 0.191 | 0.931 | 0.64 | 0.57 | 1 | - | 7 | 0 | 100% | 1 |
| 5MQJ_UDP_B_301 | 31% | 64% | 0.219 | 0.888 | 0.6 | 0.79 | - | 1 | 1 | 0 | 100% | 1 |
| 2ZIA_UDP_B_301 | 99% | 25% | 0.047 | 0.984 | 1.23 | 1.8 | 4 | 7 | 0 | 0 | 100% | 1 |
| 2ZI7_UDP_B_301 | 99% | 16% | 0.051 | 0.982 | 1.48 | 2.19 | 5 | 10 | 0 | 0 | 100% | 1 |
| 2ZI6_UDP_A_4301 | 97% | 26% | 0.071 | 0.989 | 1.16 | 1.84 | 1 | 8 | 1 | 0 | 100% | 1 |
| 7ZIA_UDP_A_301 | 96% | 30% | 0.077 | 0.988 | 1.15 | 1.65 | 3 | 6 | 0 | 0 | 100% | 1 |
| 4Q1E_UDP_B_303 | 96% | 34% | 0.078 | 0.985 | 1.14 | 1.46 | 3 | 4 | 1 | 0 | 100% | 1 |
| 8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
| 8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 42% | 0.032 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
| 3H4T_UDP_A_604 | 100% | 42% | 0.039 | 0.99 | 1.01 | 1.22 | 2 | 3 | 0 | 0 | 100% | 1 |
