GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5V3A designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5V3A_GDP_A_202 | 99% | 7% | 0.052 | 0.979 | 3.73 | 1.27 | 12 | 5 | 0 | 0 | 100% | 1 |
| 5V3A_GDP_C_202 | 98% | 6% | 0.058 | 0.977 | 3.81 | 1.35 | 12 | 3 | 2 | 0 | 100% | 1 |
| 5V3A_GDP_B_202 | 97% | 6% | 0.058 | 0.973 | 3.79 | 1.41 | 14 | 5 | 0 | 0 | 100% | 1 |
| 5V3A_GDP_D_202 | 89% | 6% | 0.073 | 0.953 | 3.84 | 1.4 | 12 | 4 | 1 | 0 | 100% | 1 |
| 4IEN_GDP_A_202 | 99% | 21% | 0.059 | 0.988 | 1.41 | 1.88 | 5 | 7 | 0 | 0 | 100% | 1 |
| 5SZY_GDP_D_200 | 94% | 52% | 0.079 | 0.979 | 0.87 | 0.98 | - | 3 | 0 | 0 | 100% | 1 |
| 5SZZ_GDP_B_202 | 92% | 37% | 0.085 | 0.975 | 1.01 | 1.43 | 1 | 5 | 2 | 0 | 100% | 1 |
| 5T02_GDP_A_200 | 88% | 43% | 0.108 | 0.984 | 1.11 | 1.08 | 1 | 2 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 23% | 0.012 | 0.999 | 2.28 | 0.95 | 3 | 2 | 8 | 0 | 100% | 1 |
| 9BL0_GDP_A_201 | 100% | 46% | 0.016 | 0.998 | 0.96 | 1.11 | 1 | 2 | 1 | 0 | 100% | 1 |
| 8QEG_GDP_A_401 | 100% | 51% | 0.031 | 0.993 | 1.02 | 0.87 | 3 | 1 | 0 | 0 | 100% | 1 |
| 8QEH_GDP_A_405 | 100% | 55% | 0.03 | 0.993 | 0.89 | 0.85 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9BAJ_GDP_A_203 | 100% | 41% | 0.032 | 0.994 | 1.22 | 1.1 | 2 | 2 | 1 | 0 | 100% | 1 |
