SPM: SPERMINE
SPM is a Ligand Of Interest in 5VJ9 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5VJ9_SPM_D_102 | 47% | 69% | 0.145 | 0.883 | 0.38 | 0.82 | - | - | 1 | 0 | 100% | 1 |
| 5VJ9_SPM_C_102 | 44% | 52% | 0.134 | 0.859 | 0.41 | 1.41 | - | 1 | 0 | 0 | 100% | 1 |
| 5VJ9_SPM_B_104 | 42% | 51% | 0.125 | 0.922 | 0.87 | 1.02 | - | 1 | 0 | 0 | 57% | 1 |
| 5VJ9_SPM_A_102 | 41% | 43% | 0.141 | 0.856 | 0.53 | 1.66 | - | 3 | 5 | 0 | 100% | 1 |
| 5VJ9_SPM_B_103 | 38% | 66% | 0.128 | 0.88 | 0.36 | 0.92 | - | 1 | 0 | 0 | 71% | 1 |
| 8OEX_SPM_A_101 | 96% | 74% | 0.072 | 0.982 | 0.48 | 0.54 | - | - | 0 | 0 | 100% | 1 |
| 6E1X_SPM_C_201 | 93% | 57% | 0.061 | 0.956 | 0.57 | 1.05 | - | - | 2 | 0 | 100% | 1 |
| 4MJ8_SPM_A_201 | 84% | 64% | 0.098 | 0.96 | 0.41 | 0.97 | - | - | 0 | 0 | 100% | 1 |
| 4MI4_SPM_A_201 | 84% | 61% | 0.096 | 0.957 | 0.73 | 0.76 | - | - | 0 | 0 | 100% | 1 |
| 3P4J_SPM_A_20 | 82% | 75% | 0.117 | 0.974 | 0.34 | 0.63 | - | - | 1 | 0 | 100% | 1 |
