6VE7

The inner junction complex of Chlamydomonas reinhardtii doublet microtubule


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

The inner junction complex of the cilia is an interaction hub that involves tubulin post-translational modifications.

Khalifa, A.A.Z.Ichikawa, M.Dai, D.Kubo, S.Black, C.Peri, K.McAlear, T.S.Veyron, S.Yang, S.K.Vargas, J.Bechstedt, S.Trempe, J.F.Bui, K.H.

(2020) Elife 9

  • DOI: https://doi.org/10.7554/eLife.52760
  • Primary Citation of Related Structures:  
    6VE7

  • PubMed Abstract: 

    Microtubules are cytoskeletal structures involved in stability, transport and organization in the cell. The building blocks, the α- and β-tubulin heterodimers, form protofilaments that associate laterally into the hollow microtubule. Microtubule also exists as highly stable doublet microtubules in the cilia where stability is needed for ciliary beating and function. The doublet microtubule maintains its stability through interactions at its inner and outer junctions where its A- and B-tubules meet. Here, using cryo-electron microscopy, bioinformatics and mass spectrometry of the doublets of Chlamydomonas reinhardtii and Tetrahymena thermophila , we identified two new inner junction proteins, FAP276 and FAP106, and an inner junction-associated protein, FAP126, thus presenting the complete answer to the inner junction identity and localization. Our structural study of the doublets shows that the inner junction serves as an interaction hub that involves tubulin post-translational modifications. These interactions contribute to the stability of the doublet and hence, normal ciliary motility.


  • Organizational Affiliation

    Department of Anatomy and Cell Biology, McGill University, Québec, Canada.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar associated protein240Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8J098 (Chlamydomonas reinhardtii)
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Entity Groups  
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UniProt GroupA8J098
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
FAP52
B, C
633Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3D260 (Chlamydomonas reinhardtii)
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UniProt GroupA0A2K3D260
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin alpha451Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for P09204 (Chlamydomonas reinhardtii)
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UniProt GroupP09204
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Protein Flattop homolog137Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8IVJ1 (Chlamydomonas reinhardtii)
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UniProt GroupA8IVJ1
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin beta443Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for P04690 (Chlamydomonas reinhardtii)
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UniProt GroupP04690
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
FAP276W,
XA [auth x]
86Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DTN6 (Chlamydomonas reinhardtii)
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UniProt GroupA0A2K3DTN6
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 20CA [auth c],
DB [auth 3],
GA [auth g],
ZA [auth z]
190Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8IU92 (Chlamydomonas reinhardtii)
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UniProt GroupA8IU92
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
PACRGCB [auth 2],
DA [auth d],
LA [auth l],
NA [auth n]
307Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for B1B601 (Chlamydomonas reinhardtii)
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UniProt GroupB1B601
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Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
TA1
Query on TA1

Download Ideal Coordinates CCD File 
AE [auth v]
CE [auth w]
DD [auth i]
FD [auth j]
JE [auth 4]
AE [auth v],
CE [auth w],
DD [auth i],
FD [auth j],
JE [auth 4],
LC [auth V],
ND [auth p],
QD [auth q],
RE [auth 8],
SD [auth r],
TC [auth a],
TE [auth 9],
UB [auth J],
VC [auth b],
WD [auth t],
YD [auth u]
TAXOL
C47 H51 N O14
RCINICONZNJXQF-MZXODVADSA-N
GTP
Query on GTP

Download Ideal Coordinates CCD File 
AD [auth h]
CC [auth P]
DE [auth y]
EE [auth 0]
GC [auth S]
AD [auth h],
CC [auth P],
DE [auth y],
EE [auth 0],
GC [auth S],
GD [auth k],
GE [auth 1],
ID [auth m],
KB [auth D],
KD [auth o],
KE [auth 5],
MB [auth E],
MC [auth X],
ME [auth 6],
OB [auth F],
OC [auth Y],
OE [auth 7],
QB [auth G],
QC [auth Z],
TD [auth s],
WB [auth L],
WC [auth e],
YB [auth M],
YC [auth f]
GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
GDP
Query on GDP

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AC [auth N]
BC [auth O]
BE [auth w]
CD [auth i]
EC [auth Q]
AC [auth N],
BC [auth O],
BE [auth w],
CD [auth i],
EC [auth Q],
ED [auth j],
FC [auth R],
IC [auth T],
IE [auth 4],
JC [auth U],
KC [auth V],
MD [auth p],
PD [auth q],
QE [auth 8],
RD [auth r],
SB [auth I],
SC [auth a],
SE [auth 9],
TB [auth J],
UC [auth b],
VB [auth K],
VD [auth t],
XD [auth u],
ZD [auth v]
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
MG
Query on MG

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BD [auth h]
DC [auth P]
FE [auth 0]
HC [auth S]
HD [auth k]
BD [auth h],
DC [auth P],
FE [auth 0],
HC [auth S],
HD [auth k],
HE [auth 1],
JD [auth m],
LB [auth D],
LD [auth o],
LE [auth 5],
NB [auth E],
NC [auth X],
NE [auth 6],
OD [auth p],
PB [auth F],
PC [auth Y],
PE [auth 7],
RB [auth G],
RC [auth Z],
UD [auth s],
XB [auth L],
XC [auth e],
ZB [auth M],
ZC [auth f]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Binding Affinity Annotations 
IDSourceBinding Affinity
TA1 BindingDB:  6VE7 IC50: 7.7 (nM) from 1 assay(s)
EC50: 520 (nM) from 1 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX9.03
RECONSTRUCTIONRELION3.0

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)CanadaRGPIN-2016-04954
Canadian Institutes of Health Research (CIHR)CanadaPJT-156354
Natural Sciences and Engineering Research Council (NSERC, Canada)CanadaRGPIN-2018-04813

Revision History  (Full details and data files)

  • Version 1.0: 2020-02-05
    Type: Initial release