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Structures from the PDB archive

1,068,577
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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Thermococcus onnurineus"

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Search Summary

This query matches 56 Structures.

Refinements

Structure Determination Methodology

experimental (56)

Scientific Name of Source Organism

	Thermococcus onnurineus NA1 (41)
	Thermococcus onnurineus (20)
	synthetic construct (10)
	Mycobacterium tuberculosis H37Rv (2)

Taxonomy

	Archaea (56)
	other sequences (10)
	Bacteria (2)

Experimental Method

	X-RAY DIFFRACTION (48)
	ELECTRON MICROSCOPY (8)

Polymer Entity Type

	Protein (56)
	RNA (15)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (10)
	2.0 - 2.5 (19)
	2.5 - 3.0 (15)
	3.0 - 3.5 (11)
	3.5 - 4.0 (1)

Release Date

	2010 - 2014 (11)
	2015 - 2019 (39)
	2020 - 2024 (6)

Enzyme Classification Name

	Transferases (23)
	Hydrolases (22)
	Ligases (2)

Symmetry Type

	Asymmetric (29)
	Cyclic (27)
	Dihedral (2)

SCOP Classification

	Artifacts (10)
	Alpha and beta proteins (a/b) (8)
	Alpha and beta proteins (a+b) (5)
	All alpha proteins (4)

AllSelected

1 to 25 of 56 Structures

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3K1J \| pdb_00003k1j	Download File View File

Crystal structure of Lon protease from Thermococcus onnurineus NA1

Cha, S.S., An, Y.J.

(2010) EMBO J 29: 3520-3530

Released	2010-09-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	ATP-dependent protease Lon (protein)
Unique Ligands	ADP, PE4, PE8

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3L18 \| pdb_00003l18	Download File View File

Ton1285, an Intracellular Protease from Thermococcus onnurineus NA1

Jung, H.J., Cha, S.S.

To be published

Released	2010-12-15
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	Intracellular protease I (protein)

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3UEB \| pdb_00003ueb	Download File View File

Crystal structure of TON_0450 from Thermococcus onnurineus NA1

Kang, H.A., Ku, B., Doung, M., Oh, B.H.

To be published

Released	2012-10-10
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	Putative uncharacterized protein (protein)

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3ZPJ \| pdb_00003zpj	Download File View File

Crystal structure of Ton1535 from Thermococcus onnurineus NA1

Jeong, J.H., kim, Y.G.

(2014) Proteins 82: 1072

Released	2013-12-04
Method	X-RAY DIFFRACTION 2.304 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	TON_1535 (protein)

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4AP9 \| pdb_00004ap9	Download File View File

Crystal structure of phosphoserine phosphatase from T. onnurineus in complex with NDSB-201

Jung, T.-Y., Kim, Y.-S., Song, H.-N., Woo, E.

(2013) Proteins 81: 819

Released	2012-12-26
Method	X-RAY DIFFRACTION 1.783 Å
Organisms	Thermococcus onnurineus
Macromolecule	PHOSPHOSERINE PHOSPHATASE (protein)
Unique Ligands	1PS

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4B6J \| pdb_00004b6j	Download File View File

Crystal structure of phosphoserine phosphatase from T. onnurineus

Jung, T.-Y., Kim, Y.-S., Song, H.-N., Woo, E.

(2013) Proteins 81: 819

Released	2012-12-26
Method	X-RAY DIFFRACTION 3.34 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	PHOSPHOSERINE PHOSPHATASE (protein)

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4DWZ \| pdb_00004dwz	Download File View File

Crystal Structure of Ton_0340

Lee, S.G., Lee, K.H., Cha, S.S., Oh, B.H.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1253-1258

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	Hypothetical protein TON_0340 (protein)
Unique Ligands	ZN

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4FC5 \| pdb_00004fc5	Download File View File

Crystal Structure of Ton_0340

Lee, S.G., Lee, K.H., An, Y.J., Cha, S.S., Oh, B.H.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1253-1258

Released	2012-09-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	ZN

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4L7M \| pdb_00004l7m	Download File View File

Crystal structure of the archaeal HEAT-like repeats protein TON_1937 from Thermococcus onnurineus NA1

Kim, Y.G., Jeong, J.H.

To be published

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.002 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	GOL

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4MB0 \| pdb_00004mb0	Download File View File

Crystal structure of TON1374

Kim, M.-K., An, Y.J., Cha, S.-S.

(2013) Biochem Biophys Res Commun 439: 533-538

Released	2014-08-06
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	phosphopantothenate synthetase (protein)
Unique Ligands	ACT

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4MB2 \| pdb_00004mb2	Download File View File

Crystal structure of TON1374 in complex with ATP

Kim, M.-K., An, Y.J., Cha, S.-S.

(2013) Biochem Biophys Res Commun 439: 533-538

Released	2014-08-06
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	Phosphopantothenate synthetase (protein)
Unique Ligands	ATP, MG

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4UW2 \| pdb_00004uw2	Download File View File

Crystal structure of Csm1 in T.onnurineus

Jung, T.Y., An, Y., Park, K.H., Lee, M.H., Oh, B.H., Woo, E.J.

(2015) Structure 23: 782

Released	2015-03-25
Method	X-RAY DIFFRACTION 2.632 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	CSM1 (protein)

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4YGQ \| pdb_00004ygq	Download File View File

Crystal structure of HAD phosphatase from Thermococcus onnurineus

Ngo, T.D., Le, B.V., Subramani, V.K., Nguyen, C.M.T., Lee, H.S., Cho, Y., Kim, K.K., Hwang, H.Y.

(2015) Biochem Biophys Res Commun 461: 122-127

Released	2015-04-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	Hydrolase (protein)
Unique Ligands	TBU

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4YGR \| pdb_00004ygr	Download File View File

Crystal structure of HAD phosphatase from Thermococcus onnurineus

Ngo, T.D., Le, B.V., Subramani, V.K., Nguyen, C.M.T., Lee, H.S., Cho, Y., Kim, K.K., Hwang, H.Y.

(2015) Biochem Biophys Res Commun 461: 122-127

Released	2015-04-22
Method	X-RAY DIFFRACTION 1.703 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	Hydrolase (protein)
Unique Ligands	MG, NHE

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4YGS \| pdb_00004ygs	Download File View File

Crystal structure of HAD phosphatase from Thermococcus onnurineus

Ngo, T.D., Le, B.V., Subramani, V.K., Nguyen, C.M.T., Lee, H.S., Cho, Y., Kim, K.K., Hwang, H.Y.

(2015) Biochem Biophys Res Commun 461: 122-127

Released	2015-04-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	Hydrolase (protein)
Unique Ligands	CIT, MG

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4ZPX \| pdb_00004zpx	Download File View File

Crystal structure of Lon ATPase domain from Thermococcus onnurineus NA1

An, Y.J., Kim, M.I., Na, J.H., Cha, S.S.

To be published

Released	2016-05-11
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	ATP-dependent protease Lon (protein)
Unique Ligands	GOL

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5B7S \| pdb_00005b7s	Download File View File

Apo structure of Cysteine Desulfurase from Thermococcus onnurineus NA1

Ho, T.-H., Kang, L.W.

(2017) Archaea 2017: 5395293-5395293

Released	2017-06-14
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	Cysteine desulfurase (protein)
Unique Ligands	GOL

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5B7U \| pdb_00005b7u	Download File View File

Apo Structure of Cysteine Desulfurase from Thermococcus onnurineus NA1 at 1.89A

Ho, T.-H., Kang, L.-W.

(2017) Archaea 2017: 5395293-5395293

Released	2017-06-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	Cysteine desulfurase (protein)
Unique Ligands	CYS, IPA

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5B87 \| pdb_00005b87	Download File View File

Crystal structure of a Cysteine Desulfurase from Thermococcus onnurineus NA1 in complex with alanine at 2.3 Angstrom resolution

Ho, T.-H., Kang, L.-W.

(2017) Archaea 2017: 5395293-5395293

Released	2017-06-14
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	Cysteine desulfurase (protein)
Unique Ligands	ALA, PLP

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5B89 \| pdb_00005b89	Download File View File

Crystal structure of a Cysteine Desulfurase from Thermococcus onnurineus NA1 in complex with alanine at 1.5 Angstrom resolution

Ho, T.-H., Kang, L.-W.

(2017) Archaea 2017: 5395293-5395293

Released	2017-06-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	Cysteine desulfurase (protein)
Unique Ligands	ALA, EDO, GOL, PLP