5XHC

Crystal structure of T2R-TTL-PO10 complex

DOI: 10.2210/pdb5XHC/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Sus barbatus, Rattus norvegicus, Gallus gallus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-04-20 Released: 2017-10-18
Deposition Author(s): Chu, Y., Wang, Y., Yang, J., Li, W.
Funding Organization(s): Qingdao science and technology bureau

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.75 Å
R-Value Free: 0.277
R-Value Work: 0.227
R-Value Observed: 0.230

wwPDB Validation 3D Report Full Report

Literature

Synthesis, biological evaluation and X-ray structure of anti-microtubule agents

Chu, Y., Wang, Y., Yang, J., Li, W.

To be published.

Macromolecules

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(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tubulin alpha chain	A, C	450	Sus barbatus	Mutation(s): 0
Find proteins for A0A0R4I993 (Sus barbatus) Explore A0A0R4I993 Go to UniProtKB: A0A0R4I993
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Reference Sequence

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(by identity cutoff) | Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Tubulin beta chain	B, D	445	Sus barbatus	Mutation(s): 0
Find proteins for A0A0R4I995 (Sus barbatus) Explore A0A0R4I995 Go to UniProtKB: A0A0R4I995
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Reference Sequence

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(by identity cutoff) | Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Stathmin-4	E	184	Rattus norvegicus	Mutation(s): 0 Gene Names: Stmn4
Find proteins for P63043 (Rattus norvegicus) Explore P63043 Go to UniProtKB: P63043
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Reference Sequence

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(by identity cutoff) | Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
TUBULIN TYROSINE LIGASE	F	384	Gallus gallus	Mutation(s): 0 Gene Names: TTL
Find proteins for E1BQ43 (Gallus gallus) Explore E1BQ43 Go to UniProtKB: E1BQ43
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Reference Sequence

Small Molecules

Ligands 7 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GTP Query on GTP Download Ideal Coordinates CCD File SDF format, chain G [A] SDF format, chain P [C] SDF format, chain S [D] MOL2 format, chain G [A] MOL2 format, chain P [C] MOL2 format, chain S [D]	A, C, D	GUANOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₄ P₃ XKMLYUALXHKNFT-UUOKFMHZSA-N		Ligand Interaction
ACP Query on ACP Download Ideal Coordinates CCD File SDF format, chain U [F] MOL2 format, chain U [F]	F	PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER C₁₁ H₁₈ N₅ O₁₂ P₃ UFZTZBNSLXELAL-IOSLPCCCSA-N		Ligand Interaction
87U Query on 87U Download Ideal Coordinates CCD File SDF format, chain M [B] MOL2 format, chain M [B]	B	(3Z,6Z)-3-[(4-tert-butyl-1H-imidazol-5-yl)methylidene]-6-[[3-(4-fluorophenyl)carbonylphenyl]methylidene]piperazine-2,5-dione C₂₆ H₂₃ F N₄ O₃ PPBYGOIXJTYVGU-FDYZEBBJSA-N		Ligand Interaction
GDP Query on GDP Download Ideal Coordinates CCD File SDF format, chain J [B] MOL2 format, chain J [B]	B	GUANOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₁ P₂ QGWNDRXFNXRZMB-UUOKFMHZSA-N		Ligand Interaction
MES Query on MES Download Ideal Coordinates CCD File SDF format, chain L [B] SDF format, chain O [B] MOL2 format, chain L [B] MOL2 format, chain O [B]	B	2-(N-MORPHOLINO)-ETHANESULFONIC ACID C₆ H₁₃ N O₄ S SXGZJKUKBWWHRA-UHFFFAOYSA-N		Ligand Interaction
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain H [A] SDF format, chain N [B] SDF format, chain R [C] MOL2 format, chain H [A] MOL2 format, chain N [B] MOL2 format, chain R [C]	A, B, C	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Ligand Interaction
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain I [B] SDF format, chain K [B] SDF format, chain Q [C] SDF format, chain T [D] MOL2 format, chain I [B] MOL2 format, chain K [B] MOL2 format, chain Q [C] MOL2 format, chain T [D]	B, C, D	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Ligand Interaction