6IE4

Crystal structure of ADCP1 tandem Agenet domain 1-2 in complex with H3K9me1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.208 

wwPDB Validation 3D Report Full Report



Literature

ADCP1-tandem Agenet domain 1-2 in complex wit h H3K9me2

Zhao, S.Zhang, B.Li, H.

(2019) Cell Res 29: 54-66


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Agenet domain-containing protein
A, C
152Arabidopsis thalianaMutation(s): 0 
Gene Names: ADCP1AGDP1At1g09320T31J12.4
Find proteins for Q500V5 (Arabidopsis thaliana)
Go to UniProtKB:  Q500V5
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
H3K9me1 peptide
B, D
11Arabidopsis thalianaMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MLZ
Query on MLZ
B,D
L-PEPTIDE LINKINGC7 H16 N2 O2LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.208 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 42.515α = 90
b = 67.529β = 90
c = 116.679γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-01-16
    Type: Initial release