6IE4

Crystal structure of ADCP1 tandem Agenet domain 1-2 in complex with H3K9me1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.696 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.202 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

ADCP1-tandem Agenet domain 1-2 in complex wit h H3K9me2

Zhao, S.Zhang, B.Li, H.

(2019) Cell Res. 29: 54-66


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Agenet domain-containing protein
A, C
152Arabidopsis thalianaMutation(s): 0 
Gene Names: AGDP1 (ADCP1)
Find proteins for Q500V5 (Arabidopsis thaliana)
Go to UniProtKB:  Q500V5
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
H3K9me1 peptide
B, D
11N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MLZ
Query on MLZ
B, D
L-PEPTIDE LINKINGC7 H16 N2 O2LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.696 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.202 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 42.515α = 90.00
b = 67.529β = 90.00
c = 116.679γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
PHASERphasing
HKL-2000data reduction
HKL-2000data scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-01-16
    Type: Initial release