6IJ9

Crystal Structure of Arabidopsis thaliana UGT89C1 complexed with UDP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.220 

wwPDB Validation 3D Report Full Report



Literature

Crystal Structure of Arabidopsis thaliana UGT89C1 complexed with UDP

Zong, G.N.Wang, X.Q.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
UDP-glycosyltransferase 89C1
A, B, C, D
435Arabidopsis thalianaMutation(s): 0 
Gene Names: UGT89C1At1g06000T21E18.5
EC: 2.4.1
Find proteins for Q9LNE6 (Arabidopsis thaliana)
Go to UniProtKB:  Q9LNE6
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UDP
Query on UDP

Download CCD File 
A, B, C, D
URIDINE-5'-DIPHOSPHATE
C9 H14 N2 O12 P2
XCCTYIAWTASOJW-XVFCMESISA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.220 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 92.979α = 90
b = 84.141β = 108.9
c = 129.146γ = 90
Software Package:
Software NamePurpose
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-10-09 
  • Released Date: 2019-10-16 
  • Deposition Author(s): Zong, G.N., Wang, X.Q.

Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina2017YFA0504801

Revision History 

  • Version 1.0: 2019-10-16
    Type: Initial release