6IJ9

Crystal Structure of Arabidopsis thaliana UGT89C1 complexed with UDP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.217 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal Structure of Arabidopsis thaliana UGT89C1 complexed with UDP

Zong, G.N.Wang, X.Q.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
UDP-glycosyltransferase 89C1
A, B, C, D
435Arabidopsis thalianaMutation(s): 0 
Gene Names: UGT89C1
EC: 2.4.1.-
Find proteins for Q9LNE6 (Arabidopsis thaliana)
Go to UniProtKB:  Q9LNE6
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UDP
Query on UDP

Download SDF File 
Download CCD File 
A, B, C, D
URIDINE-5'-DIPHOSPHATE
C9 H14 N2 O12 P2
XCCTYIAWTASOJW-XVFCMESISA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.217 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 92.979α = 90.00
b = 84.141β = 108.90
c = 129.146γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
PHENIXphasing
SCALEPACKdata scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-10-09 
  • Released Date: 2019-10-16 
  • Deposition Author(s): Zong, G.N., Wang, X.Q.

Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina2017YFA0504801

Revision History 

  • Version 1.0: 2019-10-16
    Type: Initial release