7RAH

Adenylate cyclase toxin RTX domain fragment bound to M1H5 Fab and M2B10 Fab


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.196 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural Basis for Antibody Binding to Adenylate Cyclase Toxin Reveals RTX Linkers as Neutralization-sensitive Epitopes

Goldsmith, J.A.DiVenere, A.M.Maynard, J.A.McLellan, J.S.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
M1H5 Fab Light ChainA215Mus musculusMutation(s): 0 
Protein Feature View
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
M1H5 Fab Heavy ChainB233Mus musculusMutation(s): 0 
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
M2B10 Fab Light ChainC214Mus musculusMutation(s): 0 
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
M2B10 Fab Heavy ChainD235Mus musculusMutation(s): 0 
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Bifunctional adenylate cyclase toxin/hemolysin CyaA,Bifunctional adenylate cyclase toxin/hemolysin CyaAE458Bordetella pertussisMutation(s): 0 
Gene Names: cyacyaAFF138_04025NCTC10911_01123
UniProt
Find proteins for A0A380ZZA1 (Bordetella pertussis)
Explore A0A380ZZA1 
Go to UniProtKB:  A0A380ZZA1
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download Ideal Coordinates CCD File 
F [auth A]PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
CA
Query on CA

Download Ideal Coordinates CCD File 
G [auth E] , H [auth E] , I [auth E] , J [auth E] , K [auth E] , L [auth E] , M [auth E] , N [auth E] , 
G [auth E],  H [auth E],  I [auth E],  J [auth E],  K [auth E],  L [auth E],  M [auth E],  N [auth E],  O [auth E],  P [auth E],  Q [auth E],  R [auth E],  S [auth E],  T [auth E],  U [auth E],  V [auth E],  W [auth E],  X [auth E],  Y [auth E]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.196 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.559α = 90
b = 117.02β = 90
c = 254.709γ = 90
Software Package:
Software NamePurpose
Cootmodel building
PHENIXrefinement
iMOSFLMdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI122753

Revision History  (Full details and data files)

  • Version 1.0: 2021-09-15
    Type: Initial release