Cryo-EM structure of the Arabidopsis thaliana photosystem I(PSI-LHCII-ST2)
Chen, S.J.B., Wu, J.H., Sui, S.F., Zhang, L.X.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chlorophyll a-b binding protein 6, chloroplastic | A [auth 1] | 241 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: LHCA1, CAB6, At3g54890, F28P10.130 | ![]() |
UniProt | |||||
Find proteins for Q01667 (Arabidopsis thaliana) Explore Q01667  Go to UniProtKB:  Q01667 | |||||
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Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q01667 | ||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I chlorophyll a/b-binding protein 2, chloroplastic | B [auth 2] | 257 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: LHCA2, At3g61470, F2A19.70 | ![]() |
UniProt | |||||
Find proteins for Q9SYW8 (Arabidopsis thaliana) Explore Q9SYW8  Go to UniProtKB:  Q9SYW8 | |||||
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Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9SYW8 | ||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic | C [auth 3] | 273 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: LHCA3, At1g61520, T25B24.12 | ![]() |
UniProt | |||||
Find proteins for Q9SY97 (Arabidopsis thaliana) Explore Q9SY97  Go to UniProtKB:  Q9SY97 | |||||
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Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9SY97 | ||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Chlorophyll a-b binding protein 4, chloroplastic | D [auth 4] | 251 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: LHCA4, CAB4, At3g47470, F1P2.20 | ![]() |
UniProt | |||||
Find proteins for P27521 (Arabidopsis thaliana) Explore P27521  Go to UniProtKB:  P27521 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P27521 | ||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I P700 chlorophyll a apoprotein A1 | E [auth A] | 750 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: psaA, AtCg00350 EC: 1.97.1.12 | ![]() |
UniProt | |||||
Find proteins for P56766 (Arabidopsis thaliana) Explore P56766  Go to UniProtKB:  P56766 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P56766 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I P700 chlorophyll a apoprotein A2 | F [auth B] | 734 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: psaB, AtCg00340 EC: 1.97.1.12 | ![]() |
UniProt | |||||
Find proteins for P56767 (Arabidopsis thaliana) Explore P56767  Go to UniProtKB:  P56767 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P56767 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I iron-sulfur center | G [auth C] | 81 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: psaC, frxA, AtCg01060 EC: 1.97.1.12 | ![]() |
UniProt | |||||
Find proteins for P62090 (Arabidopsis thaliana) Explore P62090  Go to UniProtKB:  P62090 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62090 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit II-2, chloroplastic | H [auth D] | 204 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: PSAD2, At1g03130, F10O3_4 | ![]() |
UniProt | |||||
Find proteins for Q9SA56 (Arabidopsis thaliana) Explore Q9SA56  Go to UniProtKB:  Q9SA56 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9SA56 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit IV A, chloroplastic | I [auth E] | 143 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: PSAE1, At4g28750, F16A16.140 | ![]() |
UniProt | |||||
Find proteins for Q9S831 (Arabidopsis thaliana) Explore Q9S831  Go to UniProtKB:  Q9S831 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9S831 | ||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit III, chloroplastic | J [auth F] | 221 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: PSAF, At1g31330, T19E23.12 | ![]() |
UniProt | |||||
Find proteins for Q9SHE8 (Arabidopsis thaliana) Explore Q9SHE8  Go to UniProtKB:  Q9SHE8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9SHE8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit V, chloroplastic | K [auth G] | 160 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: PSAG, At1g55670, F20N2.21, F20N2.33, F20N2_3 | ![]() |
UniProt | |||||
Find proteins for Q9S7N7 (Arabidopsis thaliana) Explore Q9S7N7  Go to UniProtKB:  Q9S7N7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9S7N7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit VI-2, chloroplastic | L [auth H] | 145 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: PSAH2, At1g52230, F9I5.11 | ![]() |
UniProt | |||||
Find proteins for Q9SUI6 (Arabidopsis thaliana) Explore Q9SUI6  Go to UniProtKB:  Q9SUI6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9SUI6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit VIII | M [auth I] | 37 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: psaI, AtCg00510 | ![]() |
UniProt | |||||
Find proteins for P56768 (Arabidopsis thaliana) Explore P56768  Go to UniProtKB:  P56768 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P56768 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit IX | N [auth J] | 44 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: psaJ, AtCg00630 | ![]() |
UniProt | |||||
Find proteins for P56769 (Arabidopsis thaliana) Explore P56769  Go to UniProtKB:  P56769 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P56769 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 15 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit psaK, chloroplastic | O [auth K] | 130 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: PSAK, At1g30380, T4K22.2 | ![]() |
UniProt | |||||
Find proteins for Q9SUI5 (Arabidopsis thaliana) Explore Q9SUI5  Go to UniProtKB:  Q9SUI5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9SUI5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 16 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Photosystem I reaction center subunit XI, chloroplastic | P [auth L] | 219 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: PSAL, At4g12800, T20K18.150 | ![]() |
UniProt | |||||
Find proteins for Q9SUI4 (Arabidopsis thaliana) Explore Q9SUI4  Go to UniProtKB:  Q9SUI4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9SUI4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 11 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DGD Query on DGD | IG [auth B] | DIGALACTOSYL DIACYL GLYCEROL (DGDG) C51 H96 O15 LDQFLSUQYHBXSX-HXXRYREZSA-N | |||
CHL (Subject of Investigation/LOI) Query on CHL | GA [auth 2] HA [auth 2] JA [auth 2] NA [auth 2] NB [auth 4] | CHLOROPHYLL B C55 H70 Mg N4 O6 MWVCRINOIIOUAU-UYSPMESUSA-M | |||
CL0 (Subject of Investigation/LOI) Query on CL0 | PC [auth A] | CHLOROPHYLL A ISOMER C55 H72 Mg N4 O5 VIQFHHZSLDFWDU-DVXFRRMCSA-M | |||
CLA (Subject of Investigation/LOI) Query on CLA | AA [auth 1] AB [auth 3] AC [auth 4] AD [auth A] AE [auth A] | CHLOROPHYLL A C55 H72 Mg N4 O5 ATNHDLDRLWWWCB-AENOIHSZSA-M | |||
LMG Query on LMG | VB [auth 4], XB [auth 4] | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE C45 H86 O10 DCLTVZLYPPIIID-CVELTQQQSA-N | |||
LHG Query on LHG | EA [auth 1] JD [auth A] LF [auth B] UA [auth 2] VD [auth A] | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE C38 H75 O10 P BIABMEZBCHDPBV-MPQUPPDSSA-N | |||
XAT Query on XAT | DA [auth 1], MB [auth 4], SA [auth 2] | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL C40 H56 O4 SZCBXWMUOPQSOX-WVJDLNGLSA-N | |||
LUT Query on LUT | FA [auth 1], HB [auth 3], KA [auth 2], MA [auth 2], QB [auth 4] | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL C40 H56 O2 KBPHJBAIARWVSC-NSIPBSJQSA-N | |||
BCR Query on BCR | AG [auth B] CD [auth A] CG [auth B] CH [auth K] DH [auth L] | BETA-CAROTENE C40 H56 OENHQHLEOONYIE-JLTXGRSLSA-N | |||
PQN Query on PQN | IF [auth B], ND [auth A] | PHYLLOQUINONE C31 H46 O2 MBWXNTAXLNYFJB-NKFFZRIASA-N | |||
SF4 Query on SF4 | JG [auth C], KG [auth C], OD [auth A] | IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N |
Funding Organization | Location | Grant Number |
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National Natural Science Foundation of China (NSFC) | China | -- |