Download MendeleyCrystal structure of HLA B*18:01 in complex with EEIEITTHF, an 9-mer epitope from Influenza A
Murdolo, L.D., Maddumaage, J., Gras, S.To be published.
8RNH
Crystal structure of HLA B*18:01 in complex with EEIEITTHF, an 9-mer epitope from Influenza A
- PDB DOI: https://doi.org/10.2210/pdb8RNH/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens, Influenza A virus (A/Memphis/18/1978(H3N2))
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2024-01-10 Released: 2024-05-08
- Funding Organization(s): National Health and Medical Research Council (NHMRC, Australia)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.234
- R-Value Work: 0.202
- R-Value Observed: 0.203
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| MHC class I antigen | 276 | Homo sapiens | Mutation(s): 0 Gene Names: HLA-B |  | |
UniProt | |||||
Find proteins for A0A167RQK8 (Homo sapiens) Explore A0A167RQK8 Go to UniProtKB: A0A167RQK8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A167RQK8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| RNA-directed RNA polymerase catalytic subunit | B [auth C] | 9 | Influenza A virus (A/Memphis/18/1978(H3N2)) | Mutation(s): 0 EC: 2.7.7.48 |  |
UniProt | |||||
Find proteins for Q2VNC5 (Influenza A virus (strain A/Memphis/18/1978 H3N2)) Explore Q2VNC5 Go to UniProtKB: Q2VNC5 | |||||
Entity Groups | |||||
| UniProt Group | Q2VNC5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-2-microglobulin | C [auth B] | 100 | Homo sapiens | Mutation(s): 0 Gene Names: B2M, CDABP0092, HDCMA22P |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61769 (Homo sapiens) Explore P61769 Go to UniProtKB: P61769 | |||||
PHAROS: P61769 GTEx: ENSG00000166710 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P61769 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PEG (Subject of Investigation/LOI) Query on PEG | D [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| EDO (Subject of Investigation/LOI) Query on EDO | E [auth A], F [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.234
- R-Value Work: 0.202
- R-Value Observed: 0.203
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 50.75 | α = 90 |
| b = 81.627 | β = 90 |
| c = 110.556 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-05-08 Deposition Author(s): Murdolo, L.D., Maddumaage, J., Gras, S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Health and Medical Research Council (NHMRC, Australia) | Australia | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-05-08
Type: Initial release
