8CXJ

The IgI3 domain of R28 protein from S. pyogenes bound to CEACAM1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.209 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Human CEACAM1 is targeted by a Streptococcus pyogenes adhesin implicated in puerperal sepsis pathogenesis.

Catton, E.A.Bonsor, D.A.Herrera, C.Stalhammar-Carlemalm, M.Lyndin, M.Turner, C.E.Soden, J.van Strijp, J.A.G.Singer, B.B.van Sorge, N.M.Lindahl, G.McCarthy, A.J.

(2023) Nat Commun 14: 2275-2275

  • DOI: https://doi.org/10.1038/s41467-023-37732-1
  • Primary Citation of Related Structures:  
    8CXJ

  • PubMed Abstract: 

    Life-threatening bacterial infections in women after childbirth, known as puerperal sepsis, resulted in classical epidemics and remain a global health problem. While outbreaks of puerperal sepsis have been ascribed to Streptococcus pyogenes, little is known about disease mechanisms. Here, we show that the bacterial R28 protein, which is epidemiologically associated with outbreaks of puerperal sepsis, specifically targets the human receptor CEACAM1. This interaction triggers events that would favor the development of puerperal sepsis, including adhesion to cervical cells, suppression of epithelial wound repair and subversion of innate immune responses. High-resolution structural analysis showed that an R28 domain with IgI3-like fold binds to the N-terminal domain of CEACAM1. Together, these findings demonstrate that a single adhesin-receptor interaction can drive the pathogenesis of bacterial sepsis and provide molecular insights into the pathogenesis of one of the most important infectious diseases in medical history.


  • Organizational Affiliation

    Centre for Bacterial Resistance Biology, Section of Molecular Microbiology, Department of Infectious Diseases, Imperial College London, London, SW7 2AZ, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Carcinoembryonic antigen-related cell adhesion molecule 1A,
B [auth C],
C [auth E],
D [auth G]
109Homo sapiensMutation(s): 0 
Gene Names: CEACAM1BGPBGP1
UniProt & NIH Common Fund Data Resources
Find proteins for P13688 (Homo sapiens)
Explore P13688 
Go to UniProtKB:  P13688
PHAROS:  P13688
GTEx:  ENSG00000079385 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP13688
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Surface protein R28E [auth D],
F [auth B],
G [auth F],
H
125Streptococcus pyogenesMutation(s): 0 
Gene Names: spr28
UniProt
Find proteins for Q9XDB6 (Streptococcus pyogenes)
Explore Q9XDB6 
Go to UniProtKB:  Q9XDB6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9XDB6
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
AA [auth G]
J [auth A]
K [auth A]
L [auth A]
M [auth A]
AA [auth G],
J [auth A],
K [auth A],
L [auth A],
M [auth A],
Q [auth C],
R [auth C],
S [auth C],
T [auth C],
V [auth E],
W [auth E],
X [auth E],
Y [auth E],
Z [auth G]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
GOL
Query on GOL

Download Ideal Coordinates CCD File 
DA [auth B],
I [auth A],
O [auth C],
P [auth C],
U [auth E]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
CL
Query on CL

Download Ideal Coordinates CCD File 
BA [auth G],
CA [auth D],
N [auth A]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.209 
  • Space Group: P 43
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 76.962α = 90
b = 76.962β = 90
c = 334.849γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/V006495/1

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-15
    Type: Initial release
  • Version 1.1: 2023-10-04
    Changes: Data collection, Database references
  • Version 1.2: 2023-10-25
    Changes: Refinement description