9QQA | pdb_00009qqa

Ternary complex of translating ribosome, NAC and NMT1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Mechanism of cotranslational protein N-myristoylation in human cells.

Gamerdinger, M.Echeverria, B.Lentzsch, A.M.Burg, N.Fan, Z.Jaskolowski, M.Scaiola, A.Piening, S.Shan, S.O.Ban, N.Deuerling, E.

(2025) Mol Cell 85: 2749

  • DOI: https://doi.org/10.1016/j.molcel.2025.06.015
  • Primary Citation of Related Structures:  
    9QQA, 9QQB

  • PubMed Abstract: 

    N-myristoyltransferases (NMTs) cotranslationally transfer the fatty acid myristic acid to the N terminus of newly synthesized proteins, regulating their function and cellular localization. These enzymes are important drug targets for the treatment of cancer and viral infections. N-myristoylation of nascent proteins occurs specifically on N-terminal glycine residues after the excision of the initiator methionine by methionine aminopeptidases (METAPs). How NMTs interact with ribosomes and gain timely and specific access to their substrates remains unknown. Here, we show that human NMT1 exchanges with METAP1 at the ribosomal tunnel exit to form an active cotranslational complex together with the nascent polypeptide-associated complex (NAC). NMT1 binding is sequence selective and specifically triggered by methionine excision, which exposes the N-myristoylation motif in the nascent chain. The revealed mode of interaction of NMT1 with NAC and the methionine-cleaved nascent protein elucidates how a specific subset of proteins can be efficiently N-myristoylated in human cells.


  • Organizational Affiliation
    • Department of Biology, Molecular Microbiology, University of Konstanz, 78457 Konstanz, Germany. Electronic address: martin.gamerdinger@uni-konstanz.de.

Macromolecules

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS27B [auth AA]84Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1TZ76 (Oryctolagus cuniculus)
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS28C [auth AB]69Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1TIB4 (Oryctolagus cuniculus)
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-ribosomal protein eS31 fusion proteinD [auth AC]156Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1SK22 (Oryctolagus cuniculus)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-like FUBI-ribosomal protein eS30 fusion proteinE [auth AD]133Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1T8A2 (Oryctolagus cuniculus)
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
eS26F [auth AE]115Oryctolagus cuniculusMutation(s): 0 
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Find proteins for A0A2K5LQY6 (Cercocebus atys)
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein RACK1G [auth AF]317Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS14H [auth AG]56Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS2J [auth AZ]295Oryctolagus cuniculusMutation(s): 1 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3aK [auth Aa]264Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S2L [auth Ab]293Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3M [auth Ac]281Oryctolagus cuniculusMutation(s): 0 
EC: 4.2.99.18
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Find proteins for G1TNM3 (Oryctolagus cuniculus)
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S4N [auth Ad]263Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1TK17 (Oryctolagus cuniculus)
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS7O [auth Ae]204Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S6P [auth Af]249Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S7Q [auth Ag]432Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S8R [auth Ah]208Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS4S [auth Ai]194Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
S10_plectin domain-containing proteinT [auth Aj]165Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS17U [auth Ak]158Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS12V [auth Al]132Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS15W [auth Am]151Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS11X [auth An]151Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS19Y [auth Ao]145Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS9Z [auth Ap]172Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS17AA [auth Aq]135Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS13BA [auth Ar]152Oryctolagus cuniculusMutation(s): 1 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S19CA [auth As]145Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS10DA [auth At]119Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS21EA [auth Au]84Oryctolagus cuniculusMutation(s): 1 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS8FA [auth Av]130Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S23GA [auth Aw]143Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S24HA [auth Ax]130Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS25IA [auth Ay]124Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein eS32JA [auth Az]25Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL2NA [auth BA]257Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L3OA [auth BB]403Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL4PA [auth BC]413Oryctolagus cuniculusMutation(s): 1 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L6QA [auth BE]291Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal Protein uL30RA [auth BF]247Oryctolagus cuniculusMutation(s): 0 
UniProt
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L7aSA [auth BG]266Oryctolagus cuniculusMutation(s): 0 
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PHAROS:  P62424
GTEx:  ENSG00000148303 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L9TA [auth BH]192Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L10UA [auth BI]214Oryctolagus cuniculusMutation(s): 0 
UniProt
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L11VA [auth BJ]178Oryctolagus cuniculusMutation(s): 0 
UniProt
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
Nascent chainWA [auth BK]12Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL13XA [auth BL]211Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L14YA [auth BM]218Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L15ZA [auth BN]204Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL13AB [auth BO]203Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL22BB [auth BP]184Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
eL18CB [auth BQ]188Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L19DB [auth BR]196Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL20EB [auth BS]176Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L21FB [auth BT]160Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L22GB [auth BU]128Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L23HB [auth BV]140Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L24IB [auth BW]157Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL23JB [auth BX]156Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L26KB [auth BY]145Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27LB [auth BZ]136Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27aMB [auth Ba]148Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L29NB [auth Bb]245Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L30OB [auth Bc]115Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L31PB [auth Bd]125Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L32QB [auth Be]135Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L35aRB [auth Bf]110Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L34SB [auth Bg]117Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L35TB [auth Bh]123Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L36UB [auth Bi]105Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L37VB [auth Bj]97Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L38WB [auth Bk]70Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L39-likeXB [auth Bl]51Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-ribosomal protein eL40 fusion proteinYB [auth Bm]128Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL42ZB [auth Bo]106Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L37aAC [auth Bp]92Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 80
MoleculeChains Sequence LengthOrganismDetailsImage
[histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5BBC [auth Br]137Oryctolagus cuniculusMutation(s): 1 
EC: 2.1.1.361 (PDB Primary Data), 2.1.1.362 (PDB Primary Data)
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Entity ID: 81
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL10CC [auth Bs]318Oryctolagus cuniculusMutation(s): 0 
UniProt
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Entity ID: 82
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L12DC [auth Bt]165Oryctolagus cuniculusMutation(s): 0 
UniProt
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Entity ID: 83
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein uL1EC [auth Bv]217Oryctolagus cuniculusMutation(s): 0 
UniProt
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Entity ID: 84
MoleculeChains Sequence LengthOrganismDetailsImage
Glycylpeptide N-tetradecanoyltransferase 1FC [auth MA]496Homo sapiensMutation(s): 1 
Gene Names: NMT1NMT
EC: 2.3.1.97 (PDB Primary Data), 2.3.1 (PDB Primary Data)
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PHAROS:  P30419
GTEx:  ENSG00000136448 
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Entity ID: 85
MoleculeChains Sequence LengthOrganismDetailsImage
Nascent polypeptide-associated complex subunit alphaGC [auth Nt]215Homo sapiensMutation(s): 0 
Gene Names: NACAHSD48
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GTEx:  ENSG00000196531 
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Entity ID: 86
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 2 of Transcription factor BTF3HC [auth Nu]162Homo sapiensMutation(s): 0 
Gene Names: BTF3NACBOK/SW-cl.8
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GTEx:  ENSG00000145741 
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Entity ID: 1
MoleculeChains LengthOrganismImage
18S rRNAA [auth A2]1,870Oryctolagus cuniculus
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Entity ID: 9
MoleculeChains LengthOrganismImage
P site Phe tRNAI [auth AT]76Oryctolagus cuniculus
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Entity ID: 37
MoleculeChains LengthOrganismImage
28S rRNAKA [auth B5]4,808Oryctolagus cuniculus
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Entity ID: 38
MoleculeChains LengthOrganismImage
5S rRNALA [auth B7]120Oryctolagus cuniculus
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Entity ID: 39
MoleculeChains LengthOrganismImage
5.8S rRNAMA [auth B8]158Oryctolagus cuniculus
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Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SPM
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MR [auth B5],
NR [auth B5],
VH [auth A2]
SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
SPD
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AT [auth B5]
BT [auth B5]
CT [auth B5]
DT [auth B5]
ET [auth B5]
AT [auth B5],
BT [auth B5],
CT [auth B5],
DT [auth B5],
ET [auth B5],
FT [auth B5],
GT [auth B5],
HT [auth B5],
IT [auth B5],
JT [auth B5],
KT [auth B5],
LT [auth B5],
MT [auth B5],
NH [auth A2],
NT [auth B5],
OH [auth A2],
OT [auth B5],
PH [auth A2],
QH [auth A2],
RH [auth A2],
SH [auth A2],
TH [auth A2],
TS [auth B5],
UH [auth A2],
US [auth B5],
VS [auth B5],
WS [auth B5],
XS [auth B5],
YS [auth B5],
ZS [auth B5]
SPERMIDINE
C7 H19 N3
ATHGHQPFGPMSJY-UHFFFAOYSA-N
ZN
Query on ZN

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AI [auth AC]
BI [auth AE]
CI [auth AG]
MAA [auth Bg]
NAA [auth Bj]
AI [auth AC],
BI [auth AE],
CI [auth AG],
MAA [auth Bg],
NAA [auth Bj],
PAA [auth Bm],
QAA [auth Bo],
SAA [auth Bp]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
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AD [auth A2]
AE [auth A2]
AF [auth A2]
AG [auth A2]
AJ [auth B5]
AD [auth A2],
AE [auth A2],
AF [auth A2],
AG [auth A2],
AJ [auth B5],
AK [auth B5],
AL [auth B5],
AM [auth B5],
AN [auth B5],
AO [auth B5],
AP [auth B5],
AQ [auth B5],
AR [auth B5],
AU [auth B5],
AZ [auth B7],
BD [auth A2],
BE [auth A2],
BF [auth A2],
BG [auth A2],
BJ [auth B5],
BK [auth B5],
BL [auth B5],
BM [auth B5],
BN [auth B5],
BO [auth B5],
BP [auth B5],
BQ [auth B5],
BR [auth B5],
BU [auth B5],
BZ [auth B7],
CAA [auth BP],
CD [auth A2],
CE [auth A2],
CF [auth A2],
CG [auth A2],
CJ [auth B5],
CK [auth B5],
CL [auth B5],
CM [auth B5],
CN [auth B5],
CO [auth B5],
CP [auth B5],
CQ [auth B5],
CR [auth B5],
CU [auth B5],
CZ [auth B7],
DD [auth A2],
DE [auth A2],
DF [auth A2],
DG [auth A2],
DJ [auth B5],
DK [auth B5],
DL [auth B5],
DM [auth B5],
DN [auth B5],
DO [auth B5],
DP [auth B5],
DQ [auth B5],
DR [auth B5],
DU [auth B5],
DZ [auth B7],
EAA [auth BR],
ED [auth A2],
EE [auth A2],
EF [auth A2],
EG [auth A2],
EI [auth Aw],
EJ [auth B5],
EK [auth B5],
EL [auth B5],
EM [auth B5],
EN [auth B5],
EO [auth B5],
EP [auth B5],
EQ [auth B5],
ER [auth B5],
EU [auth B5],
EZ [auth B7],
FD [auth A2],
FE [auth A2],
FF [auth A2],
FG [auth A2],
FI [auth B5],
FJ [auth B5],
FK [auth B5],
FL [auth B5],
FM [auth B5],
FN [auth B5],
FO [auth B5],
FP [auth B5],
FQ [auth B5],
FR [auth B5],
FU [auth B5],
FZ [auth B8],
GAA [auth BV],
GD [auth A2],
GE [auth A2],
GF [auth A2],
GG [auth A2],
GI [auth B5],
GJ [auth B5],
GK [auth B5],
GL [auth B5],
GM [auth B5],
GN [auth B5],
GO [auth B5],
GP [auth B5],
GQ [auth B5],
GR [auth B5],
GU [auth B5],
GZ [auth B8],
HD [auth A2],
HE [auth A2],
HF [auth A2],
HG [auth A2],
HI [auth B5],
HJ [auth B5],
HK [auth B5],
HL [auth B5],
HM [auth B5],
HN [auth B5],
HO [auth B5],
HP [auth B5],
HQ [auth B5],
HR [auth B5],
HU [auth B5],
HZ [auth B8],
IC [auth A2],
ID [auth A2],
IE [auth A2],
IF [auth A2],
IG [auth A2],
II [auth B5],
IJ [auth B5],
IK [auth B5],
IL [auth B5],
IM [auth B5],
IN [auth B5],
IO [auth B5],
IP [auth B5],
IQ [auth B5],
IR [auth B5],
IU [auth B5],
IZ [auth B8],
JC [auth A2],
JD [auth A2],
JE [auth A2],
JF [auth A2],
JG [auth A2],
JI [auth B5],
JJ [auth B5],
JK [auth B5],
JL [auth B5],
JM [auth B5],
JN [auth B5],
JO [auth B5],
JP [auth B5],
JQ [auth B5],
JR [auth B5],
JU [auth B5],
JZ [auth B8],
KC [auth A2],
KD [auth A2],
KE [auth A2],
KF [auth A2],
KI [auth B5],
KJ [auth B5],
KK [auth B5],
KL [auth B5],
KM [auth B5],
KN [auth B5],
KO [auth B5],
KP [auth B5],
KQ [auth B5],
KR [auth B5],
KU [auth B5],
KZ [auth B8],
LC [auth A2],
LD [auth A2],
LE [auth A2],
LF [auth A2],
LI [auth B5],
LJ [auth B5],
LK [auth B5],
LL [auth B5],
LM [auth B5],
LN [auth B5],
LO [auth B5],
LP [auth B5],
LQ [auth B5],
LR [auth B5],
LU [auth B5],
LZ [auth B8],
MC [auth A2],
MD [auth A2],
ME [auth A2],
MF [auth A2],
MI [auth B5],
MJ [auth B5],
MK [auth B5],
ML [auth B5],
MM [auth B5],
MN [auth B5],
MO [auth B5],
MP [auth B5],
MQ [auth B5],
MU [auth B5],
MZ [auth B8],
NC [auth A2],
ND [auth A2],
NE [auth A2],
NF [auth A2],
NI [auth B5],
NJ [auth B5],
NK [auth B5],
NL [auth B5],
NM [auth B5],
NN [auth B5],
NO [auth B5],
NP [auth B5],
NQ [auth B5],
NU [auth B5],
NY [auth B5],
OAA [auth Bj],
OC [auth A2],
OD [auth A2],
OE [auth A2],
OF [auth A2],
OI [auth B5],
OJ [auth B5],
OK [auth B5],
OL [auth B5],
OM [auth B5],
ON [auth B5],
OO [auth B5],
OP [auth B5],
OQ [auth B5],
OU [auth B5],
OY [auth B5],
PC [auth A2],
PD [auth A2],
PE [auth A2],
PF [auth A2],
PI [auth B5],
PJ [auth B5],
PK [auth B5],
PL [auth B5],
PM [auth B5],
PN [auth B5],
PO [auth B5],
PP [auth B5],
PQ [auth B5],
PT [auth B5],
PU [auth B5],
QC [auth A2],
QD [auth A2],
QE [auth A2],
QF [auth A2],
QI [auth B5],
QJ [auth B5],
QK [auth B5],
QL [auth B5],
QM [auth B5],
QN [auth B5],
QO [auth B5],
QP [auth B5],
QQ [auth B5],
QT [auth B5],
QU [auth B5],
RC [auth A2],
RD [auth A2],
RE [auth A2],
RF [auth A2],
RI [auth B5],
RJ [auth B5],
RK [auth B5],
RL [auth B5],
RM [auth B5],
RN [auth B5],
RO [auth B5],
RP [auth B5],
RQ [auth B5],
RT [auth B5],
RU [auth B5],
SC [auth A2],
SD [auth A2],
SE [auth A2],
SF [auth A2],
SI [auth B5],
SJ [auth B5],
SK [auth B5],
SL [auth B5],
SM [auth B5],
SN [auth B5],
SO [auth B5],
SP [auth B5],
SQ [auth B5],
ST [auth B5],
SU [auth B5],
TC [auth A2],
TD [auth A2],
TE [auth A2],
TF [auth A2],
TI [auth B5],
TJ [auth B5],
TK [auth B5],
TL [auth B5],
TM [auth B5],
TN [auth B5],
TO [auth B5],
TP [auth B5],
TQ [auth B5],
TT [auth B5],
TZ [auth BB],
UC [auth A2],
UD [auth A2],
UE [auth A2],
UF [auth A2],
UI [auth B5],
UJ [auth B5],
UK [auth B5],
UL [auth B5],
UM [auth B5],
UN [auth B5],
UO [auth B5],
UP [auth B5],
UQ [auth B5],
UT [auth B5],
UZ [auth BB],
VC [auth A2],
VD [auth A2],
VE [auth A2],
VF [auth A2],
VI [auth B5],
VJ [auth B5],
VK [auth B5],
VL [auth B5],
VM [auth B5],
VN [auth B5],
VO [auth B5],
VP [auth B5],
VQ [auth B5],
VT [auth B5],
VZ [auth BB],
WC [auth A2],
WD [auth A2],
WE [auth A2],
WF [auth A2],
WI [auth B5],
WJ [auth B5],
WK [auth B5],
WL [auth B5],
WM [auth B5],
WN [auth B5],
WO [auth B5],
WP [auth B5],
WQ [auth B5],
WT [auth B5],
WY [auth B7],
XC [auth A2],
XD [auth A2],
XE [auth A2],
XF [auth A2],
XH [auth A2],
XI [auth B5],
XJ [auth B5],
XK [auth B5],
XL [auth B5],
XM [auth B5],
XN [auth B5],
XO [auth B5],
XP [auth B5],
XQ [auth B5],
XT [auth B5],
XY [auth B7],
YC [auth A2],
YD [auth A2],
YE [auth A2],
YF [auth A2],
YI [auth B5],
YJ [auth B5],
YK [auth B5],
YL [auth B5],
YM [auth B5],
YN [auth B5],
YO [auth B5],
YP [auth B5],
YQ [auth B5],
YT [auth B5],
YY [auth B7],
YZ [auth BI],
ZC [auth A2],
ZD [auth A2],
ZE [auth A2],
ZF [auth A2],
ZH [auth A2],
ZI [auth B5],
ZJ [auth B5],
ZK [auth B5],
ZL [auth B5],
ZM [auth B5],
ZN [auth B5],
ZO [auth B5],
ZP [auth B5],
ZQ [auth B5],
ZT [auth B5],
ZY [auth B7]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
UNX
Query on UNX

Download Ideal Coordinates CCD File 
AAA [auth BN]
AH [auth A2]
AS [auth B5]
AV [auth B5]
AW [auth B5]
AAA [auth BN],
AH [auth A2],
AS [auth B5],
AV [auth B5],
AW [auth B5],
AX [auth B5],
AY [auth B5],
BAA [auth BN],
BH [auth A2],
BS [auth B5],
BV [auth B5],
BW [auth B5],
BX [auth B5],
BY [auth B5],
CH [auth A2],
CS [auth B5],
CV [auth B5],
CW [auth B5],
CX [auth B5],
CY [auth B5],
DAA [auth BQ],
DH [auth A2],
DI [auth Ad],
DS [auth B5],
DV [auth B5],
DW [auth B5],
DX [auth B5],
DY [auth B5],
EH [auth A2],
ES [auth B5],
EV [auth B5],
EW [auth B5],
EX [auth B5],
EY [auth B5],
FAA [auth BT],
FH [auth A2],
FS [auth B5],
FV [auth B5],
FW [auth B5],
FX [auth B5],
FY [auth B5],
GH [auth A2],
GS [auth B5],
GV [auth B5],
GW [auth B5],
GX [auth B5],
GY [auth B5],
HAA [auth BY],
HH [auth A2],
HS [auth B5],
HV [auth B5],
HW [auth B5],
HX [auth B5],
HY [auth B5],
IAA [auth Bb],
IH [auth A2],
IS [auth B5],
IV [auth B5],
IW [auth B5],
IX [auth B5],
IY [auth B5],
JAA [auth Bb],
JH [auth A2],
JS [auth B5],
JV [auth B5],
JW [auth B5],
JX [auth B5],
JY [auth B5],
KAA [auth Be],
KG [auth A2],
KH [auth A2],
KS [auth B5],
KV [auth B5],
KW [auth B5],
KX [auth B5],
KY [auth B5],
LAA [auth Be],
LG [auth A2],
LH [auth A2],
LS [auth B5],
LV [auth B5],
LW [auth B5],
LX [auth B5],
LY [auth B5],
MG [auth A2],
MH [auth A2],
MS [auth B5],
MV [auth B5],
MW [auth B5],
MX [auth B5],
MY [auth B5],
NG [auth A2],
NS [auth B5],
NV [auth B5],
NW [auth B5],
NX [auth B5],
NZ [auth B8],
OG [auth A2],
OR [auth B5],
OS [auth B5],
OV [auth B5],
OW [auth B5],
OX [auth B5],
OZ [auth B8],
PG [auth A2],
PR [auth B5],
PS [auth B5],
PV [auth B5],
PW [auth B5],
PX [auth B5],
PY [auth B5],
PZ [auth B8],
QG [auth A2],
QR [auth B5],
QS [auth B5],
QV [auth B5],
QW [auth B5],
QX [auth B5],
QY [auth B7],
QZ [auth B8],
RAA [auth Bo],
RG [auth A2],
RR [auth B5],
RS [auth B5],
RV [auth B5],
RW [auth B5],
RX [auth B5],
RY [auth B7],
RZ [auth BA],
SG [auth A2],
SR [auth B5],
SS [auth B5],
SV [auth B5],
SW [auth B5],
SX [auth B5],
SY [auth B7],
SZ [auth BA],
TG [auth A2],
TR [auth B5],
TU [auth B5],
TV [auth B5],
TW [auth B5],
TX [auth B5],
TY [auth B7],
UG [auth A2],
UR [auth B5],
UU [auth B5],
UV [auth B5],
UW [auth B5],
UX [auth B5],
UY [auth B7],
VG [auth A2],
VR [auth B5],
VU [auth B5],
VV [auth B5],
VW [auth B5],
VX [auth B5],
VY [auth B7],
WG [auth A2],
WH [auth A2],
WR [auth B5],
WU [auth B5],
WV [auth B5],
WW [auth B5],
WX [auth B5],
WZ [auth BH],
XG [auth A2],
XR [auth B5],
XU [auth B5],
XV [auth B5],
XW [auth B5],
XX [auth B5],
XZ [auth BI],
YG [auth A2],
YH [auth A2],
YR [auth B5],
YU [auth B5],
YV [auth B5],
YW [auth B5],
YX [auth B5],
ZG [auth A2],
ZR [auth B5],
ZU [auth B5],
ZV [auth B5],
ZW [auth B5],
ZX [auth B5],
ZZ [auth BL]
UNKNOWN ATOM OR ION
X
Modified Residues  6 Unique
IDChains TypeFormula2D DiagramParent
NMM
Query on NMM
CA [auth As]L-PEPTIDE LINKINGC7 H16 N4 O2ARG
HY3
Query on HY3
GA [auth Aw]L-PEPTIDE LINKINGC5 H9 N O3PRO
V5N
Query on V5N
NA [auth BA]L-PEPTIDE LINKINGC6 H9 N3 O3HIS
HIC
Query on HIC
OA [auth BB]L-PEPTIDE LINKINGC7 H11 N3 O2HIS
MLZ
Query on MLZ
NB [auth Bb]L-PEPTIDE LINKINGC7 H16 N2 O2LYS
M3L
Query on M3L
YB [auth Bm]L-PEPTIDE LINKINGC9 H21 N2 O2LYS
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland310030_212308
Swiss National Science FoundationSwitzerland51NF40-205601
European Research Council (ERC)European Union101072047

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-16
    Type: Initial release
  • Version 1.1: 2025-07-23
    Changes: Data collection, Database references
  • Version 1.2: 2025-07-30
    Changes: Data collection, Database references