Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad2vdia2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Ad2vdia1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Bd2vdib2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Bd2vdib1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Cd2vdic2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Cd2vdic1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Dd2vdid2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Dd2vdid1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Ed2vdie2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Ed2vdie1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Fd2vdif2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Fd2vdif1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Gd2vdig2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Gd2vdig1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Hd2vdih2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Hd2vdih1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Jd2vdij_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Kd2vdik_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Ld2vdil_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Md2vdim_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Nd2vdin_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Od2vdio_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Pd2vdip_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Id2vdii_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRuBisCo C-terminal domain8035888 3000552 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035891 3001258 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035891 3001258 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRuBisCo C-terminal domain8035888 3000552 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035891 3001258 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRuBisCo C-terminal domain8035888 3000552 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRuBisCo C-terminal domain8035888 3000552 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035891 3001258 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035891 3001258 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRuBisCo C-terminal domain8035888 3000552 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035891 3001258 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRuBisCo C-terminal domain8035888 3000552 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRuBisCo C-terminal domain8035888 3000552 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035891 3001258 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035891 3001258 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRuBisCo C-terminal domain8035888 3000552 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRuBisCO small subunit8035897 3001622 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyRuBisCO small subunit8035897 3001622 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyRuBisCO small subunit8035897 3001622 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyRuBisCO small subunit8035897 3001622 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyRuBisCO small subunit8035897 3001622 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyRuBisCO small subunit8035897 3001622 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyRuBisCO small subunit8035897 3001622 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRuBisCO small subunit8035897 3001622 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF02788e2vdiA1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
APF00016e2vdiA2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
BPF02788e2vdiB1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
BPF00016e2vdiB2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
CPF02788e2vdiC1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
CPF00016e2vdiC2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
DPF02788e2vdiD1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
DPF00016e2vdiD2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
EPF02788e2vdiE1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
EPF00016e2vdiE2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
FPF02788e2vdiF1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
FPF00016e2vdiF2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
GPF02788e2vdiG1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
GPF00016e2vdiG2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
HPF02788e2vdiH1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
HPF00016e2vdiH2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
JPF00101e2vdiJ1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
KPF00101e2vdiK1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
LPF00101e2vdiL1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
MPF00101e2vdiM1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
NPF00101e2vdiN1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
OPF00101e2vdiO1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
PPF00101e2vdiP1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
IPF00101e2vdiI1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
A3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
B3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
B3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
C3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
C3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
D3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
D3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
E3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
E3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
F3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
F3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
G3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
G3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
H3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
H3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
J3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
K3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
L3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
M3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
N3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
O3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
P3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
I3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF02788Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)Ribulose bisphosphate carboxylase large chain, N-terminal domainThe N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.Domain
A, B, C, D, E
PF00016Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)Ribulose bisphosphate carboxylase large chain, catalytic domainThe C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.Domain
I, J, K, L, M
PF00101Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)Ribulose bisphosphate carboxylase, small chain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
I, J, K, L, M
RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B, C, D, E
HYP Parent Component: PRO

RESIDAA0030

PSI-MOD :  4-hydroxy-L-proline MOD:00039
A, B, C, D, E
KCX Parent Component: LYS

RESIDAA0030

A, B, C, D, E
SMC Parent Component: CYS

RESIDAA0030 , AA0234

PSI-MOD :  4-hydroxy-L-proline MOD:00039 , S-methyl-L-cysteine MOD:00239
I, J, K, L, M
MME Parent Component: MET

RESIDAA0030 , AA0234 , AA0064

PSI-MOD :  4-hydroxy-L-proline MOD:00039 , S-methyl-L-cysteine MOD:00239 , N-methyl-L-methionine MOD:00073