5W8T
Crystal structure of MERS-CoV papain-like protease in complex with the C-terminal domain of human ISG15
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Ubiquitin-like | 8035116 | 3000157 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Ubiquitin-like | 8035116 | 3000157 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Cysteine proteinases | 8091720 | 3001808 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Cysteine proteinases | 8091720 | 3001808 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | PLpro Zn-binding domain-like | 8091721 | 3002538 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Ubiquitin-like | 8091722 | 3000157 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Ubiquitin-like | 8091722 | 3000157 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Cysteine proteinases | 8091720 | 3001808 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | PLpro Zn-binding domain-like | 8091721 | 3002538 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Cysteine proteinases | 8091720 | 3001808 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF00240 | e5w8tB1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
C [auth D] | PF00240 | e5w8tD1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
B [auth A] | PF08715 | e5w8tA2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF08715 | ECOD (1.6) |
B [auth A] | PF08715 | e5w8tA1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: PF08715 | ECOD (1.6) |
D [auth C] | PF08715 | e5w8tC1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF08715 | ECOD (1.6) |
D [auth C] | PF08715 | e5w8tC2 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: PF08715 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth A] | 3.10.20.540 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Papain-like viral protease, N-terminal domain | CATH (4.3.0) |
B [auth A] | 1.10.8.1190 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
B [auth A] | 2.60.120.1680 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
D [auth C] | 3.10.20.540 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Papain-like viral protease, N-terminal domain | CATH (4.3.0) |
D [auth C] | 1.10.8.1190 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
D [auth C] | 2.60.120.1680 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], C [auth D] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
B [auth A], D [auth C] | PF08715 | Coronavirus papain-like peptidase (CoV_peptidase) | Coronavirus papain-like peptidase | - | Family |