6DJ9 | pdb_00006dj9

Structure of the USP15 DUSP domain in complex with a high-affinity Ubiquitin Variant (UbV)


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad6dj9a_ Alpha and beta proteins (a+b) DUSP-like DUSP-like DUSP, domain in ubiquitin-specific proteases automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd6dj9b_ Alpha and beta proteins (a+b) DUSP-like DUSP-like DUSP, domain in ubiquitin-specific proteases automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd6dj9c_ Alpha and beta proteins (a+b) DUSP-like DUSP-like DUSP, domain in ubiquitin-specific proteases automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd6dj9d_ Alpha and beta proteins (a+b) DUSP-like DUSP-like DUSP, domain in ubiquitin-specific proteases automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed6dj9e_ Alpha and beta proteins (a+b) DUSP-like DUSP-like DUSP, domain in ubiquitin-specific proteases automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd6dj9f_ Alpha and beta proteins (a+b) DUSP-like DUSP-like DUSP, domain in ubiquitin-specific proteases automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Gd6dj9g_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Hd6dj9h_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Id6dj9i_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Jd6dj9j_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Kd6dj9k_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld6dj9l_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyDUSP-like 8032908 3001970 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyDUSP-like 8032908 3001970 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyDUSP-like 8032908 3001970 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyDUSP-like 8032908 3001970 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyDUSP-like 8032908 3001970 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyDUSP-like 8032908 3001970 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADUSPe6dj9A1 A: a+b complex topologyX: DUSP, domain in ubiquitin-specific proteases (From Topology)H: DUSP, domain in ubiquitin-specific proteases (From Topology)T: DUSP, domain in ubiquitin-specific proteasesF: DUSPECOD (1.6)
BDUSPe6dj9B1 A: a+b complex topologyX: DUSP, domain in ubiquitin-specific proteases (From Topology)H: DUSP, domain in ubiquitin-specific proteases (From Topology)T: DUSP, domain in ubiquitin-specific proteasesF: DUSPECOD (1.6)
CDUSPe6dj9C1 A: a+b complex topologyX: DUSP, domain in ubiquitin-specific proteases (From Topology)H: DUSP, domain in ubiquitin-specific proteases (From Topology)T: DUSP, domain in ubiquitin-specific proteasesF: DUSPECOD (1.6)
DDUSPe6dj9D1 A: a+b complex topologyX: DUSP, domain in ubiquitin-specific proteases (From Topology)H: DUSP, domain in ubiquitin-specific proteases (From Topology)T: DUSP, domain in ubiquitin-specific proteasesF: DUSPECOD (1.6)
EDUSPe6dj9E1 A: a+b complex topologyX: DUSP, domain in ubiquitin-specific proteases (From Topology)H: DUSP, domain in ubiquitin-specific proteases (From Topology)T: DUSP, domain in ubiquitin-specific proteasesF: DUSPECOD (1.6)
FDUSPe6dj9F1 A: a+b complex topologyX: DUSP, domain in ubiquitin-specific proteases (From Topology)H: DUSP, domain in ubiquitin-specific proteases (From Topology)T: DUSP, domain in ubiquitin-specific proteasesF: DUSPECOD (1.6)
Gubiquitin_1e6dj9G1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
Hubiquitin_1e6dj9H1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
Iubiquitin_1e6dj9I1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
Jubiquitin_1e6dj9J1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
Kubiquitin_1e6dj9K1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
Lubiquitin_1e6dj9L1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.2230.10 Alpha Beta 2-Layer Sandwich DUSP-like DUSP-likeCATH (utative)
C3.30.2230.10 Alpha Beta 2-Layer Sandwich DUSP-like DUSP-likeCATH (utative)
D3.30.2230.10 Alpha Beta 2-Layer Sandwich DUSP-like DUSP-likeCATH (utative)
E3.30.2230.10 Alpha Beta 2-Layer Sandwich DUSP-like DUSP-likeCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF06337DUSP domain (DUSP)DUSP domainThe DUSP (domain present in ubiquitin-specific protease) domain is found at the N-terminus of Ubiquitin-specific proteases. The structure of this domain has been solved [1]. Its tripod-like structure consists of a 3-fold alpha-helical bundle supporti ...The DUSP (domain present in ubiquitin-specific protease) domain is found at the N-terminus of Ubiquitin-specific proteases. The structure of this domain has been solved [1]. Its tripod-like structure consists of a 3-fold alpha-helical bundle supporting a triple-stranded anti-parallel beta-sheet [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Ubiquitin carboxyl-terminal hydrolase 15
G, H, I, J, K
Ubiquitin Variant UbV 15.D---