6LKQ

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2 FamilyRibosomal protein S48096837 4001399 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyAlpha-L RNA-binding motif8096838 3001473 SCOP2 (2022-06-29)
FSCOP2 FamilyRibosomal protein S78095102 4001112 SCOP2 (2022-06-29)
FSCOP2 SuperfamilyRibosomal protein S78095103 3000799 SCOP2 (2022-06-29)
HSCOP2 FamilyTranslational machinery components8095228 4000951 SCOP2 (2022-06-29)
HSCOP2 SuperfamilyRibosomal protein S5 domain 2-like8095229 3000100 SCOP2 (2022-06-29)
ISCOP2 FamilyRibosomal protein S108095176 4001240 SCOP2 (2022-06-29)
ISCOP2 SuperfamilyRibosomal protein S108095177 3001336 SCOP2 (2022-06-29)
MSCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8093698 3000068 SCOP2B (2022-06-29)
NSCOP2 Family30S Ribosomal protein S15 / 40S Ribosomal protein S138093417 4000767 SCOP2 (2022-06-29)
NSCOP2 SuperfamilyS15/NS1 RNA-binding domain8093418 3001284 SCOP2 (2022-06-29)
OSCOP2 FamilyRibosomal protein S168096013 4001077 SCOP2 (2022-06-29)
OSCOP2 SuperfamilyRibosomal protein S168096014 3000680 SCOP2 (2022-06-29)
PSCOP2 FamilyCold shock DNA-binding domain-like8095074 4001909 SCOP2 (2022-06-29)
PSCOP2 SuperfamilyNucleic acid-binding proteins8095075 3000135 SCOP2 (2022-06-29)
TSCOP2 FamilyRibosomal protein S218093477 4006173 SCOP2 (2022-06-29)
TSCOP2 SuperfamilyRibosomal protein S218093478 3002159 SCOP2 (2022-06-29)
VSCOP2 FamilyRibosomal protein L38093569 4002103 SCOP2 (2022-06-29)
VSCOP2 SuperfamilyTranslational proteins8093570 3000811 SCOP2 (2022-06-29)
WSCOP2 FamilyRibosomal protein L48098029 4003628 SCOP2 (2022-06-29)
WSCOP2 SuperfamilyRibosomal protein L48098030 3001146 SCOP2 (2022-06-29)
XSCOP2 FamilyRibosomal protein L58097875 4001498 SCOP2 (2022-06-29)
XSCOP2 SuperfamilyRL5-like8097876 3001709 SCOP2 (2022-06-29)
AA [auth 0]SCOP2 FamilyRibosomal protein L138100807 4003623 SCOP2 (2022-06-29)
AA [auth 0]SCOP2 SuperfamilyRibosomal protein L138100808 3001134 SCOP2 (2022-06-29)
BA [auth 1]SCOP2 FamilyRibosomal protein L148100867 4001826 SCOP2 (2022-06-29)
BA [auth 1]SCOP2 Superfamily50S Ribosomal protein L14-like8100868 3000433 SCOP2 (2022-06-29)
CA [auth 2]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8096018 3001045 SCOP2B (2022-06-29)
DA [auth 3]SCOP2 FamilyRibosomal protein L16p8097881 4003717 SCOP2 (2022-06-29)
DA [auth 3]SCOP2 SuperfamilyRibosomal protein L16p/L10e8097882 3000884 SCOP2 (2022-06-29)
FA [auth 5]SCOP2 FamilyRibosomal protein L18p and S118097877 4000555 SCOP2 (2022-06-29)
FA [auth 5]SCOP2 SuperfamilyTranslational machinery components8097878 3000571 SCOP2 (2022-06-29)
IA [auth 9]SCOP2 FamilyRibosomal protein l21p8093587 4001630 SCOP2 (2022-06-29)
IA [auth 9]SCOP2 Superfamilyl21p-like8093588 3002005 SCOP2 (2022-06-29)
KA [auth b]SCOP2 FamilyL23p8093681 4000943 SCOP2 (2022-06-29)
KA [auth b]SCOP2 SuperfamilyRibosomal proteins S24e L23 and L15e8093682 3000210 SCOP2 (2022-06-29)
MA [auth d]SCOP2 FamilyRibosomal protein L25-like8093525 4002376 SCOP2 (2022-06-29)
MA [auth d]SCOP2 SuperfamilyRibosomal protein L25-like8093526 3001161 SCOP2 (2022-06-29)
OA [auth f]SCOP2 FamilyRibosomal protein L288093475 4003961 SCOP2 (2022-06-29)
OA [auth f]SCOP2 SuperfamilyL28p-like8093476 3001966 SCOP2 (2022-06-29)
PA [auth g]SCOP2 FamilyRibosomal protein L29 (L29p)8097945 4000600 SCOP2 (2022-06-29)
PA [auth g]SCOP2 SuperfamilyRibosomal protein L29 (L29p)8097946 3000713 SCOP2 (2022-06-29)
WA [auth n]SCOP2 FamilyRibosomal protein L10-like8096579 4001998 SCOP2 (2022-06-29)
WA [auth n]SCOP2 SuperfamilyRibosomal protein L10-like8096580 3000665 SCOP2 (2022-06-29)
ASCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8097404 3001397 SCOP2B (2022-06-29)
KSCOP2 FamilyCold shock DNA-binding domain-like8094644 4001909 SCOP2 (2022-06-29)
KSCOP2 SuperfamilyNucleic acid-binding proteins8094645 3000135 SCOP2 (2022-06-29)
RSCOP2 FamilyRibosomal protein S198094057 4001081 SCOP2 (2022-06-29)
RSCOP2 SuperfamilyRibosomal protein S198094058 3000686 SCOP2 (2022-06-29)
JA [auth a]SCOP2 FamilyRibosomal protein L228097767 4001212 SCOP2 (2022-06-29)
JA [auth a]SCOP2 SuperfamilyRibosomal protein L228097768 3001078 SCOP2 (2022-06-29)
LA [auth c]SCOP2 FamilyRibosomal proteins L24p and L21e8097765 4001752 SCOP2 (2022-06-29)
LA [auth c]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain8097766 3000334 SCOP2 (2022-06-29)
RA [auth i]SCOP2 FamilyRibosomal protein L32p8093521 4000508 SCOP2 (2022-06-29)
RA [auth i]SCOP2 SuperfamilyZn-binding ribosomal proteins8093522 3001320 SCOP2 (2022-06-29)
UA [auth l]SCOP2 FamilyRibosomal protein L35p8093583 4003406 SCOP2 (2022-06-29)
UA [auth l]SCOP2 SuperfamilyL35p-like8093584 3000790 SCOP2 (2022-06-29)
VA [auth m]SCOP2 FamilyRibosomal protein L368093553 4003715 SCOP2 (2022-06-29)
VA [auth m]SCOP2 SuperfamilyRibosomal protein L368093554 3001346 SCOP2 (2022-06-29)
ESCOP2 FamilyRibosomal protein S68102804 4001337 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyRibosomal protein S68102805 3001323 SCOP2 (2022-06-29)
GSCOP2 FamilyRibosomal protein S88095406 4002027 SCOP2 (2022-06-29)
GSCOP2 SuperfamilyRibosomal protein S88095407 3000709 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPF00189e6lkqB2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
BPF07650e6lkqB1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
CPF00163,PF01479e6lkqC1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
DPF03719e6lkqD1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
DPF00333e6lkqD2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
FPF00177e6lkqF1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
HPF00380e6lkqH1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
IPF00338e6lkqI1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
JPF00411e6lkqJ1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
MPF00253e6lkqM1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
NPF00312e6lkqN1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
OPF00886e6lkqO1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
PPF00366e6lkqP1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
QPF01084e6lkqQ1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
SPF01649e6lkqS1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: PF01649ECOD (1.6)
TPF01165e6lkqT1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: PF01165ECOD (1.6)
VPF00297e6lkqV1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
WPF00573e6lkqW1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
XPF00281,PF00673e6lkqX1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
ZPF00298e6lkqZ1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
ZPF03946e6lkqZ2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
AA [auth 0]PF00572e6lkq01 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
BA [auth 1]PF00238e6lkq11 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
CA [auth 2]PF00828e6lkq21 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
DA [auth 3]PF00252e6lkq31 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
EA [auth 4]PF01196e6lkq41 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
FA [auth 5]PF00861e6lkq51 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
HA [auth 8]PF00453e6lkq81 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
IA [auth 9]PF00829e6lkq91 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
KA [auth b]PF00276e6lkqb1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
MA [auth d]PF01386e6lkqd1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01386ECOD (1.6)
OA [auth f]PF00830e6lkqf1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
PA [auth g]PF00831e6lkqg1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
QA [auth h]PF00327e6lkqh1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
TA [auth k]PF00468e6lkqk1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
WA [auth n]PF00466e6lkqn1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
AB [auth r]PF16320e6lkqr1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
XA [auth o]PF16320e6lkqo1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
YA [auth p]PF16320e6lkqp1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
ZA [auth q]PF16320e6lkqq1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
EB [auth v]PF22042e6lkqv3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF22042ECOD (1.6)
EB [auth v]PF16658e6lkqv1 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: PF16658ECOD (1.6)
EB [auth v]PF00009e6lkqv2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00009ECOD (1.6)
APF00318e6lkqA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
KPF00164e6lkqK1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
LPF00416e6lkqL1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
RPF00203e6lkqR1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
UPF00181e6lkqU2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
UPF03947e6lkqU1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
YPF00347e6lkqY2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
GA [auth 6]PF01245e6lkq61 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
JA [auth a]PF00237e6lkqa1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
LA [auth c]PF00467,PF17136e6lkqc1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
NA [auth e]PF01016e6lkqe1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
RA [auth i]PF01783e6lkqi1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
SA [auth j]PF00471e6lkqj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
UA [auth l]PF01632e6lkql1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
VA [auth m]PF00444e6lkqm1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
EPF01250e6lkqE1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
GPF00410e6lkqG2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
GPF00410e6lkqG1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
AA [auth 0]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
BA [auth 1]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
CA [auth 2]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
EA [auth 4]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
KA [auth b]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
MA [auth d]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
WA [auth n]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
AB [auth r],
XA [auth o],
YA [auth p],
ZA [auth q]
PF16320Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N)Ribosomal protein L7/L12 dimerisation domainThis is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1].Domain
EB [auth v]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
EB [auth v]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
EB [auth v]PF16658Class II release factor RF3, C-terminal domain (RF3_C)Class II release factor RF3, C-terminal domain- Domain
PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
JA [auth a]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
LA [auth c]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
LA [auth c]PF00467KOW motif (KOW)KOW motif- Family
RA [auth i]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
VA [auth m]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
30S ribosomal protein S3---
30S ribosomal protein S4
30S ribosomal protein S5---
30S ribosomal protein S7---
30S ribosomal protein S9
30S ribosomal protein S10---
30S ribosomal protein S11---
30S ribosomal protein S14
30S ribosomal protein S15---
30S ribosomal protein S16---
30S ribosomal protein S17---
30S ribosomal protein S18---
30S ribosomal protein S20---
30S ribosomal protein S21
50S ribosomal protein L3---
50S ribosomal protein L4---
50S ribosomal protein L5---
50S ribosomal protein L11---
AA [auth 0]50S ribosomal protein L13---
BA [auth 1]50S ribosomal protein L14---
CA [auth 2]50S ribosomal protein L15
DA [auth 3]50S ribosomal protein L16---
EA [auth 4]50S ribosomal protein L17---
FA [auth 5]50S ribosomal protein L18---
HA [auth 8]50S ribosomal protein L20---
IA [auth 9]50S ribosomal protein L21---
KA [auth b]50S ribosomal protein L23---
MA [auth d]50S ribosomal protein L25---
OA [auth f]50S ribosomal protein L28---
PA [auth g]50S ribosomal protein L29---
QA [auth h]50S ribosomal protein L30---
TA [auth k]50S ribosomal protein L34---
WA [auth n]50S ribosomal protein L10---
AB [auth r],
XA [auth o],
YA [auth p],
ZA [auth q]
50S ribosomal protein L7/L12
BB [auth s]16S ribosomal RNA---
CB [auth t]23S ribosomal RNA---
DB [auth u]5S ribosomal RNA---
EB [auth v]Peptide chain release factor 3
FB [auth w]messenger RNA---
30S ribosomal protein S2
30S ribosomal protein S12---
30S ribosomal protein S13---
30S ribosomal protein S19---
50S ribosomal protein L2---
50S ribosomal protein L6
GA [auth 6]50S ribosomal protein L19---
JA [auth a]50S ribosomal protein L22
LA [auth c]50S ribosomal protein L24
NA [auth e]50S ribosomal protein L27---
RA [auth i]50S ribosomal protein L32---
SA [auth j]50S ribosomal protein L33---
UA [auth l]50S ribosomal protein L35---
VA [auth m]50S ribosomal protein L36
30S ribosomal protein S6---
GB [auth y],
HB [auth z],
IB [auth 7],
JB [auth AA],
KB [auth BA]
Viomycin---
30S ribosomal protein S8---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
IPR002942RNA-binding S4 domainDomain
IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
IPR022801Small ribosomal subunit protein uS4Family
IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR000754Small ribosomal subunit protein uS9Family
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IPR001209Small ribosomal subunit protein uS14Family
IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
IPR001911Small ribosomal subunit protein bS21Family
CA [auth 2]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
CA [auth 2]IPR021131Large ribosomal subunit protein uL15/eL18Domain
CA [auth 2]IPR030878Large ribosomal subunit protein uL15Family
CA [auth 2]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
CA [auth 2]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
AB [auth r],
XA [auth o],
YA [auth p],
ZA [auth q]
IPR008932Large ribosomal subunit protein bL12, oligomerizationDomain
AB [auth r],
XA [auth o],
YA [auth p],
ZA [auth q]
IPR013823Large ribosomal subunit protein bL12, C-terminalDomain
AB [auth r],
XA [auth o],
YA [auth p],
ZA [auth q]
IPR036235Large ribosomal subunit protein bL12, oligomerization domain superfamilyHomologous Superfamily
AB [auth r],
XA [auth o],
YA [auth p],
ZA [auth q]
IPR014719Ribosomal protein bL12, C-terminal/adaptor protein ClpS-likeHomologous Superfamily
AB [auth r],
XA [auth o],
YA [auth p],
ZA [auth q]
IPR000206Large ribosomal subunit protein bL12Family
EB [auth v]IPR032090Peptide chain release factor 3, C-terminalDomain
EB [auth v]IPR000795Translational (tr)-type GTP-binding domainDomain
EB [auth v]IPR041732Peptide chain release factor 3, GTP-binding domainDomain
EB [auth v]IPR031157Tr-type G domain, conserved siteConserved Site
EB [auth v]IPR035647EF-G domain III/V-likeHomologous Superfamily
EB [auth v]IPR004161Translation elongation factor EFTu-like, domain 2Domain
EB [auth v]IPR004548Peptide chain release factor 3Family
EB [auth v]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
EB [auth v]IPR005225Small GTP-binding protein domainDomain
EB [auth v]IPR038467Peptide chain release factor 3, domain III superfamilyHomologous Superfamily
EB [auth v]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
IPR001865Small ribosomal subunit protein uS2Family
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
IPR000702Large ribosomal subunit protein uL6-likeFamily
IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
JA [auth a]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
JA [auth a]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
JA [auth a]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
JA [auth a]IPR001063Large ribosomal subunit protein uL22Family
JA [auth a]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
LA [auth c]IPR003256Large ribosomal subunit protein uL24Family
LA [auth c]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
LA [auth c]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
LA [auth c]IPR005824KOWDomain
LA [auth c]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
LA [auth c]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
VA [auth m]IPR000473Large ribosomal subunit protein bL36Family
VA [auth m]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily