6P5I

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyRibosomal S3Ae-like8053216 3002166 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyS13-like H2TH domain8101439 3000053 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyRibosomal protein S108097814 3001336 SCOP2B (2022-06-29)
BA [auth b]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053150 3000068 SCOP2B (2022-06-29)
HA [auth h]SCOP2B SuperfamilyWD40 repeat-like8097816 3001694 SCOP2B (2022-06-29)
NA [auth AB]SCOP2B SuperfamilyTranslational proteins8078357 3000811 SCOP2B (2022-06-29)
VA [auth AJ]SCOP2B SuperfamilyRL5-like8073894 3001709 SCOP2B (2022-06-29)
AC [auth Ap]SCOP2B SuperfamilyZn-binding ribosomal proteins8101435 3001320 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyWinged helix DNA-binding domain8055720 3000034 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052708 3002138 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyNucleic acid-binding proteins8052707 3000135 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyL30e-like8063980 3001739 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyHomeodomain-like8052970 3000001 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyS15/NS1 RNA-binding domain8052971 3001284 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyTranslational machinery components8097832 3000571 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082683 3000100 SCOP2B (2022-06-29)
USCOP2B SuperfamilyWinged helix DNA-binding domain8089322 3000034 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyRibosomal protein S88079081 3000709 SCOP2B (2022-06-29)
AA [auth a]SCOP2B SuperfamilyWinged helix DNA-binding domain8090991 3000034 SCOP2B (2022-06-29)
DA [auth d]SCOP2B SuperfamilyNucleic acid-binding proteins8095265 3000135 SCOP2B (2022-06-29)
EA [auth e]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052584 3000068 SCOP2B (2022-06-29)
FA [auth f]SCOP2B SuperfamilyRibosomal protein S30e-like8053455 3002190 SCOP2B (2022-06-29)
OA [auth AC]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052828 3002143 SCOP2B (2022-06-29)
OA [auth AC]SCOP2B SuperfamilyRibosomal protein L48052829 3001146 SCOP2B (2022-06-29)
PA [auth AD]SCOP2B SuperfamilyTranslational machinery components8052886 3000571 SCOP2B (2022-06-29)
UA [auth AI]SCOP2B SuperfamilyRibosomal protein L16p/L10e8097320 3000884 SCOP2B (2022-06-29)
YA [auth AN]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082477 3000210 SCOP2B (2022-06-29)
AB [auth AP]SCOP2B SuperfamilyRibosomal protein L228097828 3001078 SCOP2B (2022-06-29)
FB [auth AU]SCOP2B Superfamily60S Ribosomal protein L22e8061156 3002158 SCOP2B (2022-06-29)
GB [auth AV]SCOP2B Superfamily50S Ribosomal protein L14-like8072048 3000433 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyAlpha-L RNA-binding motif8052745 3001473 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyNucleic acid-binding proteins8052746 3000135 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052747 3000334 SCOP2B (2022-06-29)
IB [auth AX]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095966 3000210 SCOP2B (2022-06-29)
JB [auth AY]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076754 3000334 SCOP2B (2022-06-29)
KB [auth AZ]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053047 3000334 SCOP2B (2022-06-29)
LB [auth Aa]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8097818 3001045 SCOP2B (2022-06-29)
NB [auth Ac]SCOP2B SuperfamilyL30e-like8094953 3001739 SCOP2B (2022-06-29)
PB [auth Ae]SCOP2B SuperfamilyRibosomal protein L32e8102090 3000982 SCOP2B (2022-06-29)
QB [auth Af]SCOP2B SuperfamilyTranslational proteins8093714 3000811 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRibosomal protein S78066001 3000799 SCOP2B (2022-06-29)
RB [auth Ag]SCOP2B SuperfamilyRibosomal protein L34e-like8053543 3002203 SCOP2B (2022-06-29)
TB [auth Ai]SCOP2B SuperfamilyRibosomal protein L36e8053119 3002161 SCOP2B (2022-06-29)
WB [auth Al]SCOP2B SuperfamilyRibosomal protein L39e8095597 3001756 SCOP2B (2022-06-29)
CC [auth AK]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like8065344 3001911 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPF00318e6p5iB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
CPF01015e6p5iC2 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
CPF01015e6p5iC1 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
HPF01092e6p5iH1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
TPF00416e6p5iT1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
VPF00338e6p5iV1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
BA [auth b]PF01283e6p5ib1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01283ECOD (1.6)
HA [auth h]PF00400e6p5ih1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
MA [auth AA]PF00181e6p5iAA2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
MA [auth AA]PF03947e6p5iAA1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
NA [auth AB]PF00297e6p5iAB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
RA [auth AF]PF00327,PF08079e6p5iAF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
VA [auth AJ]PF00281,PF00673e6p5iAJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
AC [auth Ap]PF01780e6p5iAp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
BC [auth Ar]PF01778e6p5iAr1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: PF01778ECOD (1.6)
JPF01201e6p5iJ1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
KPF00163,PF01479e6p5iK1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
LPF03501e6p5iL1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03501ECOD (1.6)
MPF00366,PF16205e6p5iM1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
NPF01248e6p5iN1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
OPF08069e6p5iO2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
OPF00312e6p5iO1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
PPF00411e6p5iP1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
QPF00203e6p5iQ1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
RPF00380e6p5iR1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
SPF00833e6p5iS1 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
UPF01090e6p5iU1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
WPF01249e6p5iW1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
XPF00410e6p5iX2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
XPF00410e6p5iX1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
YPF00164e6p5iY1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
ZPF01282e6p5iZ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
AA [auth a]PF03297e6p5ia1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)
CA [auth c]PF01667e6p5ic1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
DA [auth d]PF01200e6p5id1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
EA [auth e]PF00253e6p5ie1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
FA [auth f]PF04758e6p5if1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: PF04758ECOD (1.6)
GA [auth g]PF01599e6p5ig1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01599ECOD (1.6)
DPF03719e6p5iD2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
DPF00333e6p5iD3 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
DPF00333e6p5iD1 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
OA [auth AC]PF00573e6p5iAC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
OA [auth AC]PF14374e6p5iAC2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
PA [auth AD]PF14204,PF17144e6p5iAD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
QA [auth AE]PF01159,PF03868e6p5iAE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159,PF03868ECOD (1.6)
SA [auth AG]PF01248e6p5iAG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
TA [auth AH]PF00347e6p5iAH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
UA [auth AI]PF00252e6p5iAI1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
WA [auth AL]PF01294e6p5iAL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
EPF00189e6p5iE2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
EPF07650e6p5iE1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
XA [auth AM]PF00467,PF01929e6p5iAM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
YA [auth AN]PF00827e6p5iAN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
ZA [auth AO]PF00572e6p5iAO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
AB [auth AP]PF00237e6p5iAP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
BB [auth AQ]PF17135e6p5iAQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
CB [auth AR]PF01280e6p5iAR2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
CB [auth AR]PF01280e6p5iAR1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
DB [auth AS]F_UNCLASSIFIEDe6p5iAS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
DB [auth AS]PF01775e6p5iAS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
EB [auth AT]PF01157e6p5iAT1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
FB [auth AU]PF01776e6p5iAU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
GB [auth AV]PF00238e6p5iAV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
FPF00900e6p5iF2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
FPF00467,PF16121e6p5iF3 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
FPF00900,PF08071e6p5iF1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF08071ECOD (1.6)
HB [auth AW]PF01246e6p5iAW1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
IB [auth AX]PF00276,PF03939e6p5iAX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
JB [auth AY]PF16906e6p5iAY1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
KB [auth AZ]PF00467,PF01777e6p5iAZ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01777ECOD (1.6)
LB [auth Aa]PF00828e6p5iAa1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
MB [auth Ab]PF01779e6p5iAb1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
NB [auth Ac]PF01248e6p5iAc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
OB [auth Ad]PF01198e6p5iAd1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
PB [auth Ae]PF01655e6p5iAe1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
QB [auth Af]PF01247e6p5iAf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
GPF00177e6p5iG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
RB [auth Ag]PF01199e6p5iAg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
SB [auth Ah]PF00831e6p5iAh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
TB [auth Ai]PF01158e6p5iAi1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
UB [auth Aj]PF01907e6p5iAj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
VB [auth Ak]PF01781e6p5iAk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
WB [auth Al]PF00832e6p5iAl1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
XB [auth Am]PF01020e6p5iAm1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01020ECOD (1.6)
YB [auth An]PF05162e6p5iAn1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
ZB [auth Ao]PF00935e6p5iAo1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
CC [auth AK]PF00687e6p5iAK2 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
CC [auth AK]PF00687e6p5iAK1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
IPF01251e6p5iI2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
BA [auth b]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
HA [auth h]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
MA [auth AA]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
MA [auth AA]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
NA [auth AB]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
RA [auth AF]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
RA [auth AF]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
VA [auth AJ]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
VA [auth AJ]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
AC [auth Ap]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
BC [auth Ar]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
AA [auth a]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
CA [auth c]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
DA [auth d]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
EA [auth e]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
FA [auth f]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
GA [auth g]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
OA [auth AC]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
OA [auth AC]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PA [auth AD]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
PA [auth AD]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
QA [auth AE]PF03868Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)Ribosomal protein L6, N-terminal domain- Domain
QA [auth AE]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
SA [auth AG]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
TA [auth AH]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
UA [auth AI]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
PF07650KH domain (KH_2)KH domain- Domain
PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
XA [auth AM]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
YA [auth AN]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
AB [auth AP]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
CB [auth AR]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
EB [auth AT]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
FB [auth AU]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
GB [auth AV]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
PF00467KOW motif (KOW)KOW motif- Family
HB [auth AW]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
IB [auth AX]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
IB [auth AX]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
JB [auth AY]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
JB [auth AY]PF00467KOW motif (KOW)KOW motif- Family
KB [auth AZ]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
KB [auth AZ]PF00467KOW motif (KOW)KOW motif- Family
LB [auth Aa]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
MB [auth Ab]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
NB [auth Ac]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
OB [auth Ad]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
PB [auth Ae]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
QB [auth Af]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
RB [auth Ag]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
SB [auth Ah]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
TB [auth Ai]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
UB [auth Aj]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
WB [auth Al]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
YB [auth An]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
ZB [auth Ao]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
CC [auth AK]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
uS2---
eS1- - -
eS6- - -
uS13- - -
uS10- - -
BA [auth b]eS26- - -
HA [auth h]RACK1- - -
MA [auth AA]uL2- - -
NA [auth AB]uL3- - -
RA [auth AF]uL30- - -
VA [auth AJ]uL11- - -
AC [auth Ap]eL43- - -
BC [auth Ar]eL28- - -
A [auth 2]18S rRNA---
eS8---
uS4- - -
eS10- - -
uS17- - -
eS12- - -
uS15- - -
uS11---
uS19- - -
uS9- - -
eS17- - -
eS19- - -
eS21- - -
uS8- - -
uS12- - -
eS24
AA [auth a]eS25- - -
CA [auth c]eS27- - -
DA [auth d]eS28- - -
EA [auth e]eS29- - -
FA [auth f]eS30- - -
GA [auth g]eS31- - -
IA [auth 1]IAPV-IRES---
JA [auth 5]28S rRNA---
KA [auth 7]5S rRNA---
LA [auth 8]5.8S rRNA---
uS5---
OA [auth AC]uL4- - -
PA [auth AD]uL18---
QA [auth AE]eL6- - -
SA [auth AG]eL8- - -
TA [auth AH]uL6- - -
UA [auth AI]uL16- - -
WA [auth AL]eL13---
uS3- - -
XA [auth AM]L14e---
YA [auth AN]eL15- - -
ZA [auth AO]uL13---
AB [auth AP]uL22---
BB [auth AQ]eL18---
CB [auth AR]eL19
DB [auth AS]eL20---
EB [auth AT]eL21- - -
FB [auth AU]eL22- - -
GB [auth AV]uL14- - -
eS4- - -
HB [auth AW]eL24- - -
IB [auth AX]eL23- - -
JB [auth AY]uL24- - -
KB [auth AZ]eL27- - -
LB [auth Aa]uL15- - -
MB [auth Ab]eL29- - -
NB [auth Ac]eL30- - -
OB [auth Ad]eL31- - -
PB [auth Ae]eL32- - -
QB [auth Af]eL33- - -
uS7- - -
RB [auth Ag]eL34---
SB [auth Ah]eL35- - -
TB [auth Ai]eL36- - -
UB [auth Aj]eL37- - -
VB [auth Ak]eL38---
WB [auth Al]eL39
XB [auth Am]eL40---
YB [auth An]eL41- - -
ZB [auth Ao]eL42- - -
CC [auth AK]uL1- - -
eS7- - -