6W6L

Cryo-EM structure of the human ribosome-TMCO1 translocon


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
FSCOP2B SuperfamilyTranslational machinery components8052887 3000571 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRibosomal protein L6e N-terminal domain8053099 3002160 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053100 3000334 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRibosomal protein L30p/L7e8052923 3001378 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052922 3002152 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRibosomal protein L68033688 3000724 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyRibosomal protein L16p/L10e8035491 3000884 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyRL5-like8073892 3001709 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyRibosomal protein L13e-like8053155 3002162 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8098812 3000210 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyRibosomal proteins L15p and L18e8095977 3001045 SCOP2B (2022-06-29)
VSCOP2B Superfamily60S Ribosomal protein L22e8053060 3002158 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095967 3000210 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076756 3000334 SCOP2B (2022-06-29)
BA [auth b]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8077123 3001045 SCOP2B (2022-06-29)
CA [auth c]SCOP2B SuperfamilyRibosomal protein L29e8053036 3002157 SCOP2B (2022-06-29)
GA [auth g]SCOP2B SuperfamilyTranslational proteins8087455 3000811 SCOP2B (2022-06-29)
HA [auth h]SCOP2B SuperfamilyRibosomal protein L34e-like8053540 3002203 SCOP2B (2022-06-29)
JA [auth j]SCOP2B SuperfamilyRibosomal protein L36e8053120 3002161 SCOP2B (2022-06-29)
LA [auth l]SCOP2B SuperfamilyRibosomal L38e protein-like8053567 3002206 SCOP2B (2022-06-29)
MA [auth m]SCOP2B SuperfamilyRibosomal protein L39e8095603 3001756 SCOP2B (2022-06-29)
PA [auth q]SCOP2B SuperfamilyZn-binding ribosomal proteins8101551 3001320 SCOP2B (2022-06-29)
VA [auth 1]SCOP2 FamilySecY-like8098817 4001751 SCOP2 (2022-06-29)
VA [auth 1]SCOP2 SuperfamilySecY-like8098818 3000333 SCOP2 (2022-06-29)
WA [auth 2]SCOP2 FamilyProtein translocase subunit SecE-like8098781 4005885 SCOP2 (2022-06-29)
WA [auth 2]SCOP2 SuperfamilyProtein translocase subunit SecE-like8098782 3002174 SCOP2 (2022-06-29)
BB [auth 6]SCOP2 FamilyEMC3/TMCO1-like8101849 4006639 SCOP2 (2022-06-29)
BB [auth 6]SCOP2 SuperfamilyYidC transmembrane domain-like8101850 3002720 SCOP2 (2022-06-29)
QSCOP2B SuperfamilyRibosomal protein L228076704 3001078 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyTranslational proteins8078351 3000811 SCOP2B (2022-06-29)
AA [auth a]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053050 3000334 SCOP2B (2022-06-29)
CSCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052831 3002143 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRibosomal protein L48052832 3001146 SCOP2B (2022-06-29)
DA [auth d]SCOP2B SuperfamilyL30e-like8077491 3001739 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00181e6w6lA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
APF03947e6w6lA2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
FPF14204,PF17144e6w6lF1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
GPF01159,PF03868e6w6lG1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159,PF03868ECOD (1.6)
HPF00327,PF08079e6w6lH1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
IPF01248e6w6lI1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
JPF00347e6w6lJ2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
KPF00252e6w6lK1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
LPF00281,PF00673e6w6lL1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
MPF01294e6w6lM1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
OPF00827e6w6lO1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
PPF00572e6w6lP1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
RPF17135e6w6lR1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
TF_UNCLASSIFIEDe6w6lT2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
TPF01775e6w6lT1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
UPF01157e6w6lU1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
VPF01776e6w6lV1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
WPF00238e6w6lW1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
XPF01246e6w6lX1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
YPF00276,PF03939e6w6lY1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
ZPF16906e6w6lZ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
BA [auth b]PF00828e6w6lb1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
CA [auth c]PF01779e6w6lc1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
EA [auth e]PF01198e6w6le1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
FA [auth f]PF01655e6w6lf1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
GA [auth g]PF01247e6w6lg1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
HA [auth h]PF01199e6w6lh1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
IA [auth i]PF00831e6w6li1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
JA [auth j]PF01158e6w6lj1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
KA [auth k]PF01907e6w6lk1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
LA [auth l]PF01781e6w6ll1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
MA [auth m]PF00832e6w6lm1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
NA [auth o]PF05162e6w6lo1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
OA [auth p]PF00935e6w6lp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
PA [auth q]PF01780e6w6lq1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
QA [auth r]PF01778e6w6lr1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: PF01778ECOD (1.6)
VA [auth 1]PF00344,PF10559e6w6l11 A: alpha complex topologyX: Preprotein translocase SecY subunit (From Topology)H: Preprotein translocase SecY subunit (From Topology)T: Preprotein translocase SecY subunitF: PF00344,PF10559ECOD (1.6)
WA [auth 2]PF00584e6w6l21 A: extended segmentsX: Preprotein translocase SecE subunit (From Topology)H: Preprotein translocase SecE subunit (From Topology)T: Preprotein translocase SecE subunitF: PF00584ECOD (1.6)
XA [auth 3]PF03911e6w6l31 A: extended segmentsX: Sec-beta subunit (From Topology)H: Sec-beta subunit (From Topology)T: Sec-beta subunitF: PF03911ECOD (1.6)
BB [auth 6]F_UNCLASSIFIEDe6w6l62 A: alpha bundlesX: Golgi to ER traffic protein 1 cytosolic domain (From Topology)H: Golgi to ER traffic protein 1 cytosolic domain (From Topology)T: Golgi to ER traffic protein 1 cytosolic domainF: F_UNCLASSIFIEDECOD (1.6)
BB [auth 6]PF01956e6w6l61 A: alpha bundlesX: Membrane protein insertase YidC-related (From Homology)H: Membrane protein insertase YidC-relatedT: DUF106F: PF01956ECOD (1.6)
NPF00467,PF01929e6w6lN1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
QPF00237e6w6lQ1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
SPF01280e6w6lS2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
SPF01280e6w6lS1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
BPF00297e6w6lB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
AA [auth a]PF00467,PF01777e6w6la1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01777ECOD (1.6)
CPF00573e6w6lC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
CPF14374e6w6lC2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
DA [auth d]PF01248e6w6ld1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
PF03868Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)Ribosomal protein L6, N-terminal domain- Domain
PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
PF00467KOW motif (KOW)KOW motif- Family
BA [auth b]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
CA [auth c]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
FA [auth f]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
GA [auth g]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
HA [auth h]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
IA [auth i]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
JA [auth j]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
KA [auth k]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
LA [auth l]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
MA [auth m]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
NA [auth o]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
OA [auth p]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
PA [auth q]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
QA [auth r]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
VA [auth 1]PF10559Plug domain of Sec61p (Plug_translocon)Plug domain of Sec61pThe Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side.The plug is unl ...The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side.The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 [1].
Domain
VA [auth 1]PF00344SecY (SecY)SecY- Family
WA [auth 2]PF00584SecE/Sec61-gamma subunits of protein translocation complex (SecE)SecE/Sec61-gamma subunits of protein translocation complex- Family
XA [auth 3]PF03911Sec61beta family (Sec61_beta)Sec61beta family- Family
YA [auth 4]PF09767Predicted membrane protein (DUF2053) (DUF2053)Predicted membrane protein (DUF2053)- Family
ZA [auth 5]PF04389Peptidase family M28 (Peptidase_M28)Peptidase family M28- Family
AB [auth 7]PF07946PAT complex subunit CCDC47 (CCDC47)PAT complex subunit CCDC47- Family
BB [auth 6]PF01956Integral membrane protein EMC3/TMCO1-like (EMC3_TMCO1)Integral membrane protein EMC3/TMCO1-like- Family
PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
AA [auth a]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
AA [auth a]PF00467KOW motif (KOW)KOW motif- Family
PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
DA [auth d]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
60S ribosomal protein L8
5.8S ribosomal RNA---
5S ribosomal RNA---
60S ribosomal protein L5
60S ribosomal protein L6
60S ribosomal protein L7
60S ribosomal protein L7a
60S ribosomal protein L9
60S ribosomal protein L10
60S ribosomal protein L11
60S ribosomal protein L13
60S ribosomal protein L15
60S ribosomal protein L13a
60S ribosomal protein L18
60S ribosomal protein L18a
60S ribosomal protein L21
60S ribosomal protein L22
60S ribosomal protein L23---
60S ribosomal protein L24
60S ribosomal protein L23a
60S ribosomal protein L26
BA [auth b]60S ribosomal protein L27a
CA [auth c]60S ribosomal protein L29
EA [auth e]60S ribosomal protein L31---
FA [auth f]60S ribosomal protein L32
GA [auth g]60S ribosomal protein L35a
HA [auth h]60S ribosomal protein L34
IA [auth i]60S ribosomal protein L35
JA [auth j]60S ribosomal protein L36
KA [auth k]60S ribosomal protein L37
LA [auth l]60S ribosomal protein L38
MA [auth m]60S ribosomal protein L39
NA [auth o]60S ribosomal protein L41
OA [auth p]60S ribosomal protein L36a
PA [auth q]60S ribosomal protein L37a
QA [auth r]60S ribosomal protein L28
RA [auth t]28S ribosomal RNA---
SA [auth u]tRNA---
TA [auth v]tRNA---
VA [auth 1]Protein transport protein Sec61 subunit alpha isoform 1
WA [auth 2]Protein transport protein Sec61 subunit gamma
XA [auth 3]Protein transport protein Sec61 subunit beta
YA [auth 4]Transmembrane protein 147
ZA [auth 5]Nicalin
AB [auth 7]Coiled-coil domain-containing protein 47
BB [auth 6]Calcium load-activated calcium channel
60S ribosomal protein L14
60S ribosomal protein L17
60S ribosomal protein L19
60S ribosomal protein L3
AA [auth a]60S ribosomal protein L27
60S ribosomal protein L4
DA [auth d]60S ribosomal protein L30
UA [auth y]Nascent chain mixture---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR000915Large ribosomal subunit protein eL6Family
IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
IPR039699Large ribosomal subunit protein uL30Family
IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
IPR001921Large ribosomal subunit protein eL8Family
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
IPR000702Large ribosomal subunit protein uL6-likeFamily
IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
IPR047873Large ribosomal subunit protein uL16Family
IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
IPR016180Large ribosomal subunit protein uL16 domainDomain
IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
IPR002132Large ribosomal subunit protein uL5Family
IPR001380Large ribosomal subunit protein eL13Family
IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
IPR000439Large ribosomal subunit protein eL15Family
IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
IPR005822Large ribosomal subunit protein uL13Family
IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
IPR000039Large ribosomal subunit protein eL18Family
IPR021131Large ribosomal subunit protein uL15/eL18Domain
IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
IPR028877Large ribosomal subunit protein eL20Family
IPR023573Large ribosomal subunit protein eL20 domainDomain
IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
IPR001147Large ribosomal subunit protein eL21Family
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
IPR002671Large ribosomal subunit protein eL22Family
IPR011017TRASH domainDomain
IPR000988Large ribosomal subunit protein eL24-relatedFamily
IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
IPR019985Large ribosomal subunit protein uL23Family
IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
IPR013025Large ribosomal subunit protein uL23-likeFamily
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR005824KOWDomain
IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
BA [auth b]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
BA [auth b]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
BA [auth b]IPR021131Large ribosomal subunit protein uL15/eL18Domain
BA [auth b]IPR030878Large ribosomal subunit protein uL15Family
BA [auth b]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
CA [auth c]IPR002673Large ribosomal subunit protein eL29Family
FA [auth f]IPR001515Large ribosomal subunit protein eL32Family
FA [auth f]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
FA [auth f]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
GA [auth g]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
GA [auth g]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
GA [auth g]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
GA [auth g]IPR001780Large ribosomal subunit protein eL33Family
HA [auth h]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
HA [auth h]IPR008195Large ribosomal subunit protein eL34Family
IA [auth i]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
IA [auth i]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
IA [auth i]IPR001854Large ribosomal subunit protein uL29Family
IA [auth i]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
JA [auth j]IPR000509Large ribosomal subunit protein eL36Family
JA [auth j]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
KA [auth k]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
KA [auth k]IPR001569Large ribosomal subunit protein eL37Family
KA [auth k]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
KA [auth k]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
LA [auth l]IPR002675Large ribosomal subunit protein eL38Family
LA [auth l]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
MA [auth m]IPR000077Large ribosomal subunit protein eL39Family
MA [auth m]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
MA [auth m]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
NA [auth o]IPR007836Large ribosomal subunit protein eS32Family
OA [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
OA [auth p]IPR000552Large ribosomal subunit protein eL42Family
PA [auth q]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
PA [auth q]IPR002674Large ribosomal subunit protein eL43Family
PA [auth q]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
QA [auth r]IPR029004Ribosomal eL28/Mak16Domain
QA [auth r]IPR002672Large ribosomal subunit protein eL28Family
VA [auth 1]IPR002208SecY/SEC61-alpha familyFamily
VA [auth 1]IPR030659SecY conserved siteConserved Site
VA [auth 1]IPR023201SecY domain superfamilyHomologous Superfamily
VA [auth 1]IPR019561Translocon Sec61/SecY, plug domainDomain
WA [auth 2]IPR008158Protein translocase SEC61 complex, gamma subunitFamily
WA [auth 2]IPR001901Protein translocase complex, SecE/Sec61-gamma subunitFamily
WA [auth 2]IPR023391Protein translocase SecE domain superfamilyHomologous Superfamily
XA [auth 3]IPR030671Protein transport Sec61-beta/SbhFamily
XA [auth 3]IPR016482Protein transport protein SecG/Sec61-beta/SbhFamily
YA [auth 4]IPR019164Transmembrane protein 147Family
ZA [auth 5]IPR007484Peptidase M28Domain
ZA [auth 5]IPR016574NicalinFamily
AB [auth 7]IPR012879PAT complex subunit CCDC47Family
BB [auth 6]IPR002809Integral membrane protein EMC3/TMCO1-likeFamily
BB [auth 6]IPR008559Calcium load-activated calcium channelFamily
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR039660Large ribosomal subunit protein eL14Family
IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
IPR002784Large ribosomal subunit protein eL14 domainDomain
IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
IPR001063Large ribosomal subunit protein uL22Family
IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
IPR039547Large ribosomal subunit protein eL19Family
IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
IPR000196Large ribosomal subunit protein eL19 domainDomain
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
AA [auth a]IPR001141Large ribosomal subunit protein eL27Family
AA [auth a]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
AA [auth a]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth a]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
AA [auth a]IPR005824KOWDomain
AA [auth a]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
IPR002136Large ribosomal subunit protein uL4Family
IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
DA [auth d]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
DA [auth d]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
DA [auth d]IPR000231Large ribosomal subunit protein eL30Family
DA [auth d]IPR039109Large ribosomal subunit protein eL30-likeFamily
DA [auth d]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP46777
PharosQ02878
PharosP18124
PharosP62424
PharosP32969
PharosP27635
PharosP62913
PharosP26373
PharosP61313
PharosP40429
PharosQ07020
PharosP46778
PharosP35268
PharosP83731
PharosP62750
PharosP61254
BA [auth b]PharosP46776
FA [auth f]PharosP62910
GA [auth g]PharosP18077
HA [auth h]PharosP49207
IA [auth i]PharosP42766
JA [auth j]PharosQ9Y3U8
KA [auth k]PharosP61927
LA [auth l]PharosP63173
NA [auth o]PharosP62945
PA [auth q]PharosP61513
QA [auth r]PharosP46779
VA [auth 1]PharosP61619
WA [auth 2]PharosP60059
XA [auth 3]PharosP60468
YA [auth 4]PharosQ9BVK8
ZA [auth 5]PharosQ969V3
AB [auth 7]PharosQ96A33
BB [auth 6]PharosQ9UM00
PharosP50914
PharosP18621
PharosP84098
PharosP39023
AA [auth a]PharosP61353
PharosP36578
DA [auth d]PharosP62888