1ZGU
Solution structure of the human Mms2-Ubiquitin complex
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | F1-filtered, F3-edited NOESY | [U-13C; U-15N]-Ubiquitin + hMms2 (4:1 ratio) 90% H20 : 10% D20 | 90% H20 : 10% D20 | 150 mM NaCl | 7.5 | 1 atm | 293 | |
2 | F1-filtered, F3-edited NOESY | [U-13C; U-15N]-hMms2 + Ubiquitin (1:4 ratio) 90% H20 : 10% D20 | 90% H20 : 10% D20 | 150 mM NaCl | 7.5 | 1 atm | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 800 |
3 | Varian | INOVA | 500 |
NMR Refinement | ||
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Method | Details | Software |
protein-protein docking | HADDOCK algorithm | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 10 |
Representative Model | 10 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1c | Varian, Inc. |
2 | processing | NMRPipe | 2.3 | Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J., Bax, A. |
3 | data analysis | Sparky | 3.110 | Goddard, T.D., Kneller, D.G. |
4 | structure solution | HADDOCK | 1.3 | Dominguez, C., Boelens, R., Bonvin, A.M.J.J. |
5 | refinement | HADDOCK | 1.3 | Dominguez, C., Boelens, R., Bonvin, A.M.J.J. |