X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.52983.2 M ammonium sulfate, 0.5 M lithium nitrate, 50 mM sodium acetate, pH 5.5, soaked with 1 mM silver nitrate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.3547.63

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 48.746α = 90
b = 97.815β = 90
c = 110.029γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDAPEX II CCD2011-06-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SEALED TUBEBRUKER IMUS MICROFOCUS1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6536.6899.20.10910.977.356468764144
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.731002.044.33

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (I)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1E671.729.35255707296599.930.205560.20350.24459RANDOM12.044
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.020.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.536
r_dihedral_angle_3_deg14.156
r_dihedral_angle_4_deg12.826
r_dihedral_angle_1_deg6.397
r_sphericity_free3.084
r_scangle_it3.026
r_scbond_it2.105
r_angle_refined_deg1.431
r_mcangle_it1.272
r_mcbond_it1.099
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.536
r_dihedral_angle_3_deg14.156
r_dihedral_angle_4_deg12.826
r_dihedral_angle_1_deg6.397
r_sphericity_free3.084
r_scangle_it3.026
r_scbond_it2.105
r_angle_refined_deg1.431
r_mcangle_it1.272
r_mcbond_it1.099
r_angle_other_deg0.894
r_symmetry_vdw_refined0.34
r_symmetry_vdw_other0.258
r_symmetry_hbond_refined0.25
r_mcbond_other0.226
r_nbd_refined0.209
r_nbd_other0.193
r_nbtor_refined0.17
r_xyhbond_nbd_refined0.164
r_chiral_restr0.086
r_nbtor_other0.086
r_bond_refined_d0.014
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3896
Nucleic Acid Atoms
Solvent Atoms349
Heterogen Atoms4

Software

Software
Software NamePurpose
APEXdata collection
REFMACrefinement
SAINTdata reduction
APEXdata reduction
PHASERphasing