6M9Y

X-ray Structure of Branchiostoma floridae fluorescent protein lanFP6A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72930.2M Ammonium Citrate pH 7.0, 20% PEG 3350
Crystal Properties
Matthew coefficientSolvent content
2.7855.78

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 112.726α = 90
b = 98.169β = 108.07
c = 55.145γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2018-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-BM1.0APS22-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.353093.70.0440.0530.02910.22.4116582
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.351.490.50.5370.6840.4180.7312.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4HVF1.3528.03106408107986.340.13330.1330.1688RANDOM19.371
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.020.07-0.460.33
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.013
r_sphericity_free25.646
r_dihedral_angle_4_deg15.396
r_dihedral_angle_3_deg13.569
r_sphericity_bonded12.556
r_dihedral_angle_1_deg7.254
r_rigid_bond_restr3.45
r_angle_refined_deg1.723
r_angle_other_deg1.03
r_chiral_restr0.093
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.013
r_sphericity_free25.646
r_dihedral_angle_4_deg15.396
r_dihedral_angle_3_deg13.569
r_sphericity_bonded12.556
r_dihedral_angle_1_deg7.254
r_rigid_bond_restr3.45
r_angle_refined_deg1.723
r_angle_other_deg1.03
r_chiral_restr0.093
r_bond_refined_d0.013
r_gen_planes_refined0.012
r_gen_planes_other0.004
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3512
Nucleic Acid Atoms
Solvent Atoms609
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
MOLREPphasing