6OT0

Structure of human Smoothened-Gi complex


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.651
r_dihedral_angle_3_deg15.8
r_dihedral_angle_4_deg13.75
r_long_range_B_refined9.844
r_long_range_B_other9.844
r_dihedral_angle_1_deg6.729
r_mcangle_it5.242
r_mcangle_other5.242
r_scangle_other4.048
r_mcbond_it2.842
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.651
r_dihedral_angle_3_deg15.8
r_dihedral_angle_4_deg13.75
r_long_range_B_refined9.844
r_long_range_B_other9.844
r_dihedral_angle_1_deg6.729
r_mcangle_it5.242
r_mcangle_other5.242
r_scangle_other4.048
r_mcbond_it2.842
r_mcbond_other2.842
r_scbond_it2.159
r_scbond_other2.158
r_angle_refined_deg1.159
r_angle_other_deg0.999
r_chiral_restr0.066
r_bond_refined_d0.008
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Smoothened-Gi-Fab complex
Sample Components
Smoothened homolog
Guanine nucleotide-binding protein G(i) subunit alpha-1, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
Fab light chain, Fab heavy chain
Specimen Preparation
Sample Aggregation StatePARTICLE
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles141100
Reported Resolution (Å)3.84
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å**2)1.4
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeDARK FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
NONE