CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
CAP is a Ligand Of Interest in 2VDI designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2VDI_CAP_D_1477 | 92% | 54% | 0.089 | 0.98 | 0.79 | 0.96 | - | - | 0 | 0 | 100% | 1 |
2VDI_CAP_E_1477 | 90% | 55% | 0.096 | 0.981 | 0.85 | 0.87 | - | - | 0 | 0 | 100% | 1 |
2VDI_CAP_H_1477 | 89% | 54% | 0.098 | 0.979 | 0.91 | 0.86 | - | 1 | 0 | 0 | 100% | 1 |
2VDI_CAP_A_1477 | 84% | 56% | 0.112 | 0.973 | 0.83 | 0.84 | - | - | 0 | 0 | 100% | 1 |
2VDI_CAP_C_1477 | 83% | 56% | 0.117 | 0.975 | 0.82 | 0.85 | - | - | 0 | 0 | 100% | 1 |
2VDI_CAP_F_1477 | 82% | 53% | 0.12 | 0.975 | 0.84 | 0.97 | - | 2 | 0 | 0 | 100% | 1 |
2VDI_CAP_G_1477 | 78% | 51% | 0.124 | 0.966 | 0.8 | 1.09 | - | 2 | 0 | 0 | 100% | 1 |
2VDI_CAP_B_1477 | 73% | 52% | 0.135 | 0.964 | 0.89 | 0.98 | - | - | 0 | 0 | 100% | 1 |
5IU0_CAP_A_502 | 100% | 55% | 0.041 | 0.996 | 0.93 | 0.82 | - | - | 0 | 0 | 100% | 1 |
5MZ2_CAP_A_902 | 100% | 58% | 0.04 | 0.995 | 0.75 | 0.86 | - | - | 0 | 0 | 100% | 1 |
1WDD_CAP_E_2001 | 100% | 51% | 0.039 | 0.99 | 0.88 | 1.02 | - | 1 | 0 | 0 | 100% | 1 |
8BDB_CAP_O_502 | 100% | 55% | 0.045 | 0.989 | 0.78 | 0.94 | - | - | 0 | 0 | 100% | 1 |
2V6A_CAP_B_1477 | 100% | 54% | 0.048 | 0.99 | 0.94 | 0.85 | - | - | 0 | 0 | 100% | 1 |