1D3E

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY

DOI: 10.2210/pdb1D3E/pdb

Classification: Virus/Receptor
Organism(s): Homo sapiens, Human rhinovirus sp.
Mutation(s): No

Deposited: 1999-09-29 Released: 2000-01-19
Deposition Author(s): Bella, J., Rossmann, M.G.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 28.0 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Structural studies of two rhinovirus serotypes complexed with fragments of their cellular receptor.

Kolatkar, P.R., Bella, J., Olson, N.H., Bator, C.M., Baker, T.S., Rossmann, M.G.

(1999) EMBO J 18: 6249-6259

PubMed: 10562537 Search on PubMedSearch on PubMed Central
DOI: 10.1093/emboj/18.22.6249
Primary Citation of Related Structures:
1D3E, 1D3L, 1D3I

PubMed Abstract:

Two human rhinovirus serotypes complexed with two- and five-domain soluble fragments of the cellular receptor, intercellular adhesion molecule-1, have been investigated by X-ray crystallographic analyses of the individual components and by cryo-electron microscopy of the complexes. The three-dimensional image reconstructions provide a molecular envelope within which the crystal structures of the viruses and the receptor fragments can be positioned with accuracy. The N-terminal domain of the receptor binds to the rhinovirus 'canyon' surrounding the icosahedral 5-fold axes. Fitting of molecular models into the image reconstruction density identified the residues on the virus that interact with those on the receptor surface, demonstrating complementarity of the electrostatic patterns for the tip of the N-terminal receptor domain and the floor of the canyon. The complexes seen in the image reconstructions probably represent the first stage of a multistep binding process. A mechanism is proposed for the subsequent viral uncoating process.

Related Citations:

The Structure of the Two Amino-Terminal Domains of Human Icam-1 Suggests How It Functions as a Rhinovirus Receptor and as an Lfa-1 Integrin Ligand.
Bella, J., Kolatkar, P.R., Marlor, C.W., Greve, J.M., Rossmann, M.G.
(1998) Proc Natl Acad Sci U S A 95: 4140

The Refined Structure of Human Rhinovirus 16 at 2.15 Angstroms Resolution: Implications for the Viral Life Cycle
Hadfield, A.T., Lee, W.M., Zhao, R., Oliveira, M.A., Minor, I., Rueckert, R.R., Rossmann, M.G.
(1997) Structure 5: 427

Structure of a Human Rhinovirus Complexed with its Receptor Molecule
Olson, N.H., Kolatkar, P.R., Oliveira, M.A., Cheng, R.H., Greve, J.M., Mcclelland, A., Baker, T.S., Rossmann, M.G.
(1993) Proc Natl Acad Sci U S A 90: 507

A Dimeric Crystal Structure for the N-Terminal Two Domains of Intercellular Adhesion Molecule-1
Casasnovas, J.M., Stehle, T., Liu, J.H., Wang, J.H., Springer, T.A.
(1998) Proc Natl Acad Sci U S A 95: 4134

Organizational Affiliation:

Department of Biological Sciences, Purdue University, West Lafayette, IN 47907-1392, USA.

Macromolecules

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