5ZTL

Non-cryogenic structure of light-driven chloride pump having an NTQ motif


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.240 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Non-cryogenic structure of a chloride pump provides crucial clues to temperature-dependent channel transport efficiency

Yun, J.H.Li, X.Park, J.H.Wang, Y.Ohki, M.Jin, Z.Lee, W.Park, S.Y.Hu, H.Li, C.Zatsepin, N.Hunter, M.S.Sierra, R.G.Koralek, J.Yoon, C.H.Cho, H.S.Weierstall, U.Tang, L.Liu, H.Lee, W.

(2018) J. Biol. Chem. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Chloride pumping rhodopsin
A
275Nonlabens marinus S1-08Mutation(s): 0 
Gene Names: ClR
Find proteins for W8VZW3 (Nonlabens marinus S1-08)
Go to UniProtKB:  W8VZW3
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OLA
Query on OLA

Download SDF File 
Download CCD File 
A
OLEIC ACID
C18 H34 O2
ZQPPMHVWECSIRJ-KTKRTIGZSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
RET
Query on RET

Download SDF File 
Download CCD File 
A
RETINAL
C20 H28 O
NCYCYZXNIZJOKI-OVSJKPMPSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.240 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 103.360α = 90.00
b = 50.090β = 109.65
c = 69.400γ = 90.00
Software Package:
Software NamePurpose
CrystFELdata scaling
Cootmodel building
BUSTERrefinement
PHASERphasing
PHENIXmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (Korea)Korea, Republic OfNRF-2017R1A2B2008483
National Research Foundation (Korea)Korea, Republic OfNRF-2016R1A6A3A04010213
National Natural Science Foundation of ChinaChina11575021, U1530401 and U1430237)

Revision History 

  • Version 1.0: 2018-12-05
    Type: Initial release