Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 32822.33 
• Atom Count: 2165 
• Residue Count: 275 
• Unique protein chains: 1

5ZTL

Non-cryogenic structure of light-driven chloride pump having an NTQ motif

• DOI: 10.2210/pdb5ZTL/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Nonlabens marinus S1-08
• Expression System: Escherichia coli


• Deposited: 2018-05-04 Released: 2018-12-05 
• Deposition Author(s): Yun, J.H., Park, S.Y., Liu, H., Lee, W.
• Funding Organization(s): National Research Foundation (Korea); National Natural Science Foundation of China 

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 0.278 
• R-Value Work: 0.240 

Literature

Non-cryogenic structure of a chloride pump provides crucial clues to temperature-dependent channel transport efficiency

Yun, J.H., Li, X., Park, J.H., Wang, Y., Ohki, M., Jin, Z., Lee, W., Park, S.Y., Hu, H., Li, C., Zatsepin, N., Hunter, M.S., Sierra, R.G., Koralek, J., Yoon, C.H., Cho, H.S., Weierstall, U., Tang, L., Liu, H., Lee, W.

(2019) J. Biol. Chem. 294: 794-804

• PubMed: 30455349 
• Primary Citation of Related Structures:  
  5ZTK

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Chloride pumping rhodopsin	A	275	Nonlabens marinus S1-08	Mutation(s): 0  Gene Names: ClR
Find proteins for W8VZW3 (Nonlabens marinus S1-08) Go to UniProtKB:  W8VZW3

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
OLA	A	OLEIC ACID C18 H34 O2 ZQPPMHVWECSIRJ-KTKRTIGZSA-N
CL	A	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M
RET	A	RETINAL C20 H28 O NCYCYZXNIZJOKI-OVSJKPMPSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 0.278 
• R-Value Work: 0.240 
• Space Group: C 1 2 1

Unit Cell:

Length (Å)	Angle (°)
a = 103.360	α = 90.00
b = 50.090	β = 109.65
c = 69.400	γ = 90.00

Software Package:

Software Name	Purpose
PHENIX	model building
PHASER	phasing
CrystFEL	data scaling
Coot	model building
BUSTER	refinement

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2018-05-04 
• Released Date: 2018-12-05 
• Deposition Author(s): Yun, J.H., Park, S.Y., Liu, H., Lee, W.

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Funding Organization	Location	Grant Number
National Research Foundation (Korea)	Korea, Republic Of	NRF-2017R1A2B2008483
National Research Foundation (Korea)	Korea, Republic Of	NRF-2016R1A6A3A04010213
National Natural Science Foundation of China	China	11575021, U1530401 and U1430237)

Revision History 

• Version 1.0: 2018-12-05
  Type: Initial release
• Version 1.1: 2019-01-02
  Type: Data collection
• Version 1.2: 2019-01-30
  Type: Data collection, Database references