6DCU

Crystal structure of PPAR gamma co-crystallized with nTZDpa


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.303 
  • R-Value Work: 0.264 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of PPAR gamma in complex with NMP422

Mou, T.C.Chrisman, I.M.Hughes, T.S.Sprang, S.R.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peroxisome proliferator-activated receptor gamma
A, B
301Homo sapiensMutation(s): 0 
Gene Names: PPARG (NR1C3)
Find proteins for P37231 (Homo sapiens)
Go to Gene View: PPARG
Go to UniProtKB:  P37231
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NZA
Query on NZA

Download SDF File 
Download CCD File 
A, B
5-CHLORO-1-(4-CHLOROBENZYL)-3-(PHENYLTHIO)-1H-INDOLE-2-CARBOXYLIC ACID
NTZDPA
C22 H15 Cl2 N O2 S
VUPOTURDKDMIGQ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.303 
  • R-Value Work: 0.264 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 94.085α = 90.00
b = 94.085β = 90.00
c = 192.424γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHENIXrefinement
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesP20GM103546
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney DiseaseUnited StatesR00DK103116

Revision History 

  • Version 1.0: 2019-05-15
    Type: Initial release