6JIA

Marine bacterial laminarinase mutant E135A complex with laminaritetraose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.157 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

Marine bacterial laminarinase mutant E135A complex with laminaritetraose

Jian, Y.Yuqun, X.Miyakawa, T.Tanokura, M.Lijuan, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
LamCAT
A
243N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ALL
Query on ALL

Download SDF File 
Download CCD File 
A
D-ALLOPYRANOSE
C6 H12 O6
WQZGKKKJIJFFOK-QZABAPFNSA-N
 Ligand Interaction
CA
Query on CA

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Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
BGC
Query on BGC

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Download CCD File 
A
BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
 Ligand Interaction
GLC
Query on GLC

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Download CCD File 
A
ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
 Ligand Interaction
Z6H
Query on Z6H

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Download CCD File 
A
alpha-L-altropyranose
C6 H12 O6
WQZGKKKJIJFFOK-FQJSGBEDSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.157 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 66.863α = 90.00
b = 95.456β = 90.00
c = 72.381γ = 90.00
Software Package:
Software NamePurpose
XDSdata scaling
REFMACrefinement
XDSdata reduction
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-05-15
    Type: Initial release
  • Version 2.0: 2019-09-18
    Type: Atomic model, Data collection