6LTJ

Structure of nucleosome-bound human BAF complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report



Literature

Structure of nucleosome-bound human BAF complex

Shuang, H.Zihan, W.Yuan, T.Zishuo, Y.Jiali, Y.Xinxin, W.Jie, L.Bijun, L.Yanhui, X.

(2020) Science 


Macromolecules

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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Histone H2A type 1C, G130Xenopus laevisMutation(s): 0 
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Histone H2BD, H126Xenopus laevisMutation(s): 0 
Gene Names: H2B
Find proteins for P02281 (Xenopus laevis)
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
Actin, cytoplasmic 1K375Homo sapiensMutation(s): 0 
Gene Names: ACTB
Find proteins for P60709 (Homo sapiens)
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PHAROS  P60709
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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
Zinc finger protein ubi-d4R292Homo sapiensMutation(s): 0 
Gene Names: DPF2BAF45D
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PHAROS  Q92785
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Histone H3.3A, E136Xenopus laevisMutation(s): 0 
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
SWI/SNF complex subunit SMARCC2N, O1214Homo sapiensMutation(s): 0 
Gene Names: SMARCC2BAF170
Find proteins for Q8TAQ2 (Homo sapiens)
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PHAROS  Q8TAQ2
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1P515Homo sapiensMutation(s): 0 
Gene Names: SMARCD1BAF60A
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PHAROS  Q96GM5
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Entity ID: 12
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SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1Q411Homo sapiensMutation(s): 0 
Gene Names: SMARCE1BAF57
Find proteins for Q969G3 (Homo sapiens)
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PHAROS  Q969G3
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Histone H4B, F103Xenopus laevisMutation(s): 0 
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Transcription activator BRG1I1647Homo sapiensMutation(s): 0 
Gene Names: SMARCA4BAF190ABRG1SNF2BSNF2L4
EC: 3.6.4
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PHAROS  P51532
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
Actin-like protein 6AJ407Homo sapiensMutation(s): 0 
Gene Names: ACTL6ABAF53BAF53AINO80K
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PHAROS  O96019
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
AT-rich interactive domain-containing protein 1AL1295Homo sapiensMutation(s): 0 
Gene Names: ARID1ABAF250BAF250AC1orf4OSA1SMARCF1
Find proteins for O14497 (Homo sapiens)
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PHAROS  O14497
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1M336Homo sapiensMutation(s): 0 
Gene Names: SMARCB1BAF47
Find proteins for Q12824 (Homo sapiens)
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PHAROS  Q12824
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Entity ID: 14
MoleculeChainsLengthOrganismImage
DNA (119-MER)X119Homo sapiens
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Entity ID: 15
MoleculeChainsLengthOrganismImage
DNA (119-MER)Y119Homo sapiens
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download CCD File 
L
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-02-12
    Type: Initial release