Macromolecule Content

Total Structure Weight: 55.16 kDa
Atom Count: 4467
Residue Count: 481
Unique protein chains: 1

6ZFD

14-3-3 zeta bound to the phosphorylated 18E6 C-terminus

DOI: 10.2210/pdb6ZFD/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens, Human papillomavirus type 18
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-06-17 Released: 2021-02-17
Deposition Author(s): Gogl, G., Tugaeva, K.V., Sluchanko, N.N., Trave, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.207
R-Value Work: 0.176
R-Value Observed: 0.178

wwPDB Validation 3D Report Full Report

Literature

Structural basis for the recognition of high-risk human papillomavirus E6 proteins by 14-3-3 proteins and its uncommon modulation by fusicoccin

Gogl, G., Tugaeva, K.V., Sluchanko, N.N., Trave, G.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
14-3-3 protein zeta/delta,Protein E6	A, B	243	Homo sapiens, Human papillomavirus type 18 This entity is chimeric	Mutation(s): 0 Gene Names: YWHAZ, E6
Find proteins for P06463 (Human papillomavirus type 18) Explore P06463 Go to UniProtKB: P06463
Find proteins for P63104 (Homo sapiens) Explore P63104 Go to UniProtKB: P63104
NIH Common Fund Data Resources
PHAROS: P63104 GTEx: ENSG00000164924
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain C [A] SDF format, chain D [B] SDF format, chain E [B] SDF format, chain F [B] MOL2 format, chain C [A] MOL2 format, chain D [B] MOL2 format, chain E [B] MOL2 format, chain F [B]	A, B	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
TPO Query on TPO	A,B	L-PEPTIDE LINKING	C₄ H₁₀ N O₆ P		THR

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.207
R-Value Work: 0.176
R-Value Observed: 0.178
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 72.35	α = 90
b = 78.53	β = 90
c = 90.3	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2020-06-17
Released Date: 2021-02-17

Deposition Author(s):

Sluchanko, N.N.

Revision History

Version 1.0: 2021-02-17
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.