7YZY
pMMO structure from native membranes by cryoET and STA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Gx transporter-like | 8095951 | 3002268 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | Gx transporter-like | 8095951 | 3002268 | SCOP2B (2022-06-29) |
G [auth J] | SCOP2B Superfamily | Gx transporter-like | 8095951 | 3002268 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Ammonia monooxygenase/methane monooxygenase subunit C-like | 8053445 | 3002188 | SCOP2B (2022-06-29) |
E [auth G] | SCOP2B Superfamily | Ammonia monooxygenase/methane monooxygenase subunit C-like | 8053445 | 3002188 | SCOP2B (2022-06-29) |
H [auth K] | SCOP2B Superfamily | Ammonia monooxygenase/methane monooxygenase subunit C-like | 8053445 | 3002188 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | PapD-like | 8095933 | 3002067 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | Monooxygenase subunit B transmembrane domain-like | 8095934 | 3002711 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | Monooxygenase subunit B C-terminal domain-like | 8095935 | 3002712 | SCOP2B (2022-06-29) |
F [auth E] | SCOP2B Superfamily | Monooxygenase subunit B transmembrane domain-like | 8095934 | 3002711 | SCOP2B (2022-06-29) |
F [auth E] | SCOP2B Superfamily | Monooxygenase subunit B C-terminal domain-like | 8095935 | 3002712 | SCOP2B (2022-06-29) |
F [auth E] | SCOP2B Superfamily | PapD-like | 8095933 | 3002067 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | PapD-like | 8095933 | 3002067 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Monooxygenase subunit B transmembrane domain-like | 8095934 | 3002711 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Monooxygenase subunit B C-terminal domain-like | 8095935 | 3002712 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF02461 | e7yzyB1 | A: alpha bundles | X: PmoA (From Topology) | H: PmoA (From Topology) | T: PmoA | F: PF02461 | ECOD (1.6) |
D [auth F] | PF02461 | e7yzyF1 | A: alpha bundles | X: PmoA (From Topology) | H: PmoA (From Topology) | T: PmoA | F: PF02461 | ECOD (1.6) |
G [auth J] | PF02461 | e7yzyJ1 | A: alpha bundles | X: PmoA (From Topology) | H: PmoA (From Topology) | T: PmoA | F: PF02461 | ECOD (1.6) |
B [auth C] | PF04896 | e7yzyC1 | A: alpha bundles | X: STAT-like | H: Ammonia monooxygenase subunit C (From Topology) | T: Ammonia monooxygenase subunit C | F: PF04896 | ECOD (1.6) |
E [auth G] | PF04896 | e7yzyG1 | A: alpha bundles | X: STAT-like | H: Ammonia monooxygenase subunit C (From Topology) | T: Ammonia monooxygenase subunit C | F: PF04896 | ECOD (1.6) |
H [auth K] | PF04896 | e7yzyK1 | A: alpha bundles | X: STAT-like | H: Ammonia monooxygenase subunit C (From Topology) | T: Ammonia monooxygenase subunit C | F: PF04896 | ECOD (1.6) |
C [auth A] | PF04744 | e7yzyA3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF04744 | ECOD (1.6) |
C [auth A] | PF04744 | e7yzyA1 | A: alpha bundles | X: Long alpha-hairpin | H: PmoB helical hairpin (From Topology) | T: PmoB helical hairpin | F: PF04744 | ECOD (1.6) |
F [auth E] | PF04744 | e7yzyE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF04744 | ECOD (1.6) |
F [auth E] | PF04744 | e7yzyE3 | A: alpha bundles | X: Long alpha-hairpin | H: PmoB helical hairpin (From Topology) | T: PmoB helical hairpin | F: PF04744 | ECOD (1.6) |
I | PF04744 | e7yzyI3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF04744 | ECOD (1.6) |
I | PF04744 | e7yzyI2 | A: alpha bundles | X: Long alpha-hairpin | H: PmoB helical hairpin (From Topology) | T: PmoB helical hairpin | F: PF04744 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], D [auth F], G [auth J] | PF02461 | Ammonia monooxygenase (AMO) | Ammonia monooxygenase | - | Family |
B [auth C], E [auth G], H [auth K] | PF04896 | Ammonia monooxygenase/methane monooxygenase, subunit C (AmoC) | Ammonia monooxygenase/methane monooxygenase, subunit C | - | Family |
C [auth A], F [auth E], I | PF04744 | Monooxygenase subunit B protein (Monooxygenase_B) | Monooxygenase subunit B protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth B], D [auth F], G [auth J] | Particulate methane monooxygenase beta subunit |
| ||
B [auth C], E [auth G], H [auth K] | Methane monooxygenase subunit C2 | - | ||
C [auth A], F [auth E], I | Particulate methane monooxygenase alpha subunit | - |
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Methane monooxygenase |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |